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5dph

From Proteopedia

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Current revision (21:54, 28 June 2023) (edit) (undo)
 
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<StructureSection load='5dph' size='340' side='right'caption='[[5dph]], [[Resolution|resolution]] 1.42&Aring;' scene=''>
<StructureSection load='5dph' size='340' side='right'caption='[[5dph]], [[Resolution|resolution]] 1.42&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5dph]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aeqvi Aeqvi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DPH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DPH FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5dph]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DPH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DPH FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO2:CARBON+DIOXIDE'>CO2</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.42&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=4CF:4-CYANO-L-PHENYLALANINE'>4CF</scene>, <scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4CF:4-CYANO-L-PHENYLALANINE'>4CF</scene>, <scene name='pdbligand=CO2:CARBON+DIOXIDE'>CO2</scene>, <scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5dpg|5dpg]], [[5dpi|5dpi]], [[5dpj|5dpj]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dph FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dph OCA], [https://pdbe.org/5dph PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dph RCSB], [https://www.ebi.ac.uk/pdbsum/5dph PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dph ProSAT]</span></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gfp ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6100 AEQVI])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dph FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dph OCA], [http://pdbe.org/5dph PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dph RCSB], [http://www.ebi.ac.uk/pdbsum/5dph PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dph ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Aeqvi]]
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[[Category: Aequorea victoria]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Brewer, S H]]
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[[Category: Brewer SH]]
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[[Category: Dippel, A B]]
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[[Category: Dippel AB]]
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[[Category: Liskov, M T]]
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[[Category: Liskov MT]]
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[[Category: Maurici, N]]
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[[Category: Maurici N]]
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[[Category: Olenginski, G M]]
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[[Category: Olenginski GM]]
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[[Category: Phillips-Piro, C M]]
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[[Category: Phillips-Piro CM]]
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[[Category: Cyanophenylalanine]]
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[[Category: Fluorescent protein]]
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[[Category: Gfp]]
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[[Category: Unnatural amino acid]]
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Current revision

sfGFP mutant - 149 p-cyano-L-phenylalanine

PDB ID 5dph

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OCA

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