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5e5d

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Current revision (06:13, 5 July 2023) (edit) (undo)
 
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<StructureSection load='5e5d' size='340' side='right'caption='[[5e5d]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
<StructureSection load='5e5d' size='340' side='right'caption='[[5e5d]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5e5d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanor Xanor]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3dld 3dld]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5E5D OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5E5D FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5e5d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_oryzae_pv._oryzae_KACC_10331 Xanthomonas oryzae pv. oryzae KACC 10331]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3dld 3dld]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5E5D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5E5D FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3dld|3dld]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">def, XOO1075 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=291331 XANOR])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5e5d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5e5d OCA], [https://pdbe.org/5e5d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5e5d RCSB], [https://www.ebi.ac.uk/pdbsum/5e5d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5e5d ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5e5d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5e5d OCA], [http://pdbe.org/5e5d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5e5d RCSB], [http://www.ebi.ac.uk/pdbsum/5e5d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5e5d ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/Q5H3Z2_XANOR Q5H3Z2_XANOR]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
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[https://www.uniprot.org/uniprot/Q5H3Z2_XANOR Q5H3Z2_XANOR] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Peptide deformylase]]
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[[Category: Xanthomonas oryzae pv. oryzae KACC 10331]]
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[[Category: Xanor]]
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[[Category: Kang LW]]
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[[Category: Kang, L W]]
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[[Category: Ngo HPT]]
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[[Category: Ngo, H P.T]]
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[[Category: Hydrolase]]
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[[Category: Metal binding protein]]
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Current revision

Native structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv. oryzae

PDB ID 5e5d

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