This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5eyo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:33, 12 July 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==The crystal structure of the Max bHLH domain in complex with 5-carboxyl cytosine DNA==
==The crystal structure of the Max bHLH domain in complex with 5-carboxyl cytosine DNA==
-
<StructureSection load='5eyo' size='340' side='right' caption='[[5eyo]], [[Resolution|resolution]] 2.39&Aring;' scene=''>
+
<StructureSection load='5eyo' size='340' side='right'caption='[[5eyo]], [[Resolution|resolution]] 2.39&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5eyo]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5EYO FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5eyo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EYO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5EYO FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1CC:5-CARBOXY-2-DEOXYCYTIDINE+MONOPHOSPHATE'>1CC</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.39&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5eyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eyo OCA], [http://pdbe.org/5eyo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5eyo RCSB], [http://www.ebi.ac.uk/pdbsum/5eyo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5eyo ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1CC:5-CARBOXY-2-DEOXYCYTIDINE+MONOPHOSPHATE'>1CC</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5eyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eyo OCA], [https://pdbe.org/5eyo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5eyo RCSB], [https://www.ebi.ac.uk/pdbsum/5eyo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5eyo ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/MAX_HUMAN MAX_HUMAN]] Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor. May repress transcription via the recruitment of a chromatin remodeling complex containing H3 'Lys-9' histone methyltransferase activity.
+
[https://www.uniprot.org/uniprot/MAX_HUMAN MAX_HUMAN] Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor. May repress transcription via the recruitment of a chromatin remodeling complex containing H3 'Lys-9' histone methyltransferase activity.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cheng, X]]
+
[[Category: Homo sapiens]]
-
[[Category: Hashimoto, H]]
+
[[Category: Large Structures]]
-
[[Category: Wang, D]]
+
[[Category: Synthetic construct]]
-
[[Category: Zhang, X]]
+
[[Category: Cheng X]]
-
[[Category: 5-carboxylcytosine dna]]
+
[[Category: Hashimoto H]]
-
[[Category: Bhlh protein]]
+
[[Category: Wang D]]
-
[[Category: Transcription-dna complex]]
+
[[Category: Zhang X]]

Current revision

The crystal structure of the Max bHLH domain in complex with 5-carboxyl cytosine DNA

PDB ID 5eyo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools