This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5f6r
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Co-crystal Structure of 3-hydroxydecanoyl-(acyl carrier protein) Dehydratase from Yersinia pestis with 5-Benzoylpentanoic Acid== | ==Co-crystal Structure of 3-hydroxydecanoyl-(acyl carrier protein) Dehydratase from Yersinia pestis with 5-Benzoylpentanoic Acid== | ||
| - | <StructureSection load='5f6r' size='340' side='right' caption='[[5f6r]], [[Resolution|resolution]] 1.18Å' scene=''> | + | <StructureSection load='5f6r' size='340' side='right'caption='[[5f6r]], [[Resolution|resolution]] 1.18Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5f6r]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5f6r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis_CO92 Yersinia pestis CO92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F6R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5F6R FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.179Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5VO:6-OXIDANYLIDENE-6-PHENYL-HEXANOIC+ACID'>5VO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | |
| - | <tr id=' | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5f6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f6r OCA], [https://pdbe.org/5f6r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5f6r RCSB], [https://www.ebi.ac.uk/pdbsum/5f6r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5f6r ProSAT]</span></td></tr> |
| - | + | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/FABA_YERPE FABA_YERPE] Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E-(2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length.[HAMAP-Rule:MF_00405] |
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Yersinia pestis CO92]] |
| - | [[Category: | + | [[Category: Anderson WF]] |
| - | [[Category: Joachimiak | + | [[Category: Joachimiak A]] |
| - | [[Category: Kim | + | [[Category: Kim Y]] |
| - | [[Category: Kwon | + | [[Category: Kwon K]] |
| - | [[Category: Maltseva | + | [[Category: Maltseva N]] |
| - | [[Category: Zhang | + | [[Category: Zhang R]] |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Co-crystal Structure of 3-hydroxydecanoyl-(acyl carrier protein) Dehydratase from Yersinia pestis with 5-Benzoylpentanoic Acid
| |||||||||||
