This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5fgu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:50, 19 July 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Structure of Sda1 nuclease apoprotein as an EGFP fixed-arm fusion==
==Structure of Sda1 nuclease apoprotein as an EGFP fixed-arm fusion==
-
<StructureSection load='5fgu' size='340' side='right' caption='[[5fgu]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='5fgu' size='340' side='right'caption='[[5fgu]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5fgu]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FGU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FGU FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5fgu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria] and [https://en.wikipedia.org/wiki/Streptococcus_pyogenes Streptococcus pyogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FGU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FGU FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.896&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5fgw|5fgw]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fgu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fgu OCA], [https://pdbe.org/5fgu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fgu RCSB], [https://www.ebi.ac.uk/pdbsum/5fgu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fgu ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fgu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fgu OCA], [http://pdbe.org/5fgu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fgu RCSB], [http://www.ebi.ac.uk/pdbsum/5fgu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fgu ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI]] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
+
[https://www.uniprot.org/uniprot/Q675N6_STRPY Q675N6_STRPY] [https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 21:
==See Also==
==See Also==
-
*[[Green Fluorescent Protein|Green Fluorescent Protein]]
+
*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cuneo, M J]]
+
[[Category: Aequorea victoria]]
-
[[Category: Krahn, J M]]
+
[[Category: Large Structures]]
-
[[Category: Moon, A F]]
+
[[Category: Streptococcus pyogenes]]
-
[[Category: Pedersen, L C]]
+
[[Category: Cuneo MJ]]
-
[[Category: Xun, L]]
+
[[Category: Krahn JM]]
-
[[Category: Beta-beta-alpha metal finger nuclease]]
+
[[Category: Moon AF]]
-
[[Category: Dna binding protein]]
+
[[Category: Pedersen LC]]
-
[[Category: Metal binding]]
+
[[Category: Xun L]]
-
[[Category: Metal binding protein]]
+
-
[[Category: Sequence nonspecific dna binding]]
+

Current revision

Structure of Sda1 nuclease apoprotein as an EGFP fixed-arm fusion

PDB ID 5fgu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5fgu"
Personal tools