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5fys

From Proteopedia

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'''Unreleased structure'''
 
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The entry 5fys is ON HOLD until Paper Publication
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==Crystal structure of the catalytic domain of human JARID1B in complex with D-2-hydroxyglutarate==
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<StructureSection load='5fys' size='340' side='right'caption='[[5fys]], [[Resolution|resolution]] 1.89&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5fys]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FYS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FYS FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.89&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2HG:(2R)-2-HYDROXYPENTANEDIOIC+ACID'>2HG</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fys FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fys OCA], [https://pdbe.org/5fys PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fys RCSB], [https://www.ebi.ac.uk/pdbsum/5fys PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fys ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/KDM5B_HUMAN KDM5B_HUMAN] Histone demethylase that demethylates 'Lys-4' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-9' or H3 'Lys-27'. Demethylates trimethylated, dimethylated and monomethylated H3 'Lys-4'. Acts as a transcriptional corepressor for FOXG1B and PAX9. Favors the proliferation of breast cancer cells by repressing tumor suppressor genes such as BRCA1 and HOXA5. In contrast, may act as a tumor suppressor for melanoma.<ref>PMID:12657635</ref> <ref>PMID:16645588</ref> <ref>PMID:17320161</ref> <ref>PMID:17363312</ref>
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Authors: Nowak, R., Kopec, J., Johansson, C., Gileadi, C., Kupinska, K., Strain-Damerell, C., Szykowska, A., Von Delft, F., Burgess-Brown, N.A., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Oppermann, U.
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==See Also==
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*[[Lysine-specific histone demethylase 3D structures|Lysine-specific histone demethylase 3D structures]]
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Description: Crystal structure of the catalytic domain of human JARID1B in complex with D-2-hydroxyglutarate
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== References ==
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[[Category: Unreleased Structures]]
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<references/>
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[[Category: Nowak, R]]
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__TOC__
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[[Category: Burgess-Brown, N.A]]
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</StructureSection>
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[[Category: Bountra, C]]
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[[Category: Homo sapiens]]
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[[Category: Kupinska, K]]
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[[Category: Large Structures]]
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[[Category: Arrowsmith, C.H]]
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[[Category: Arrowsmith CH]]
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[[Category: Gileadi, C]]
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[[Category: Bountra C]]
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[[Category: Oppermann, U]]
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[[Category: Burgess-Brown NA]]
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[[Category: Szykowska, A]]
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[[Category: Edwards AM]]
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[[Category: Kopec, J]]
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[[Category: Gileadi C]]
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[[Category: Von Delft, F]]
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[[Category: Johansson C]]
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[[Category: Edwards, A.M]]
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[[Category: Kopec J]]
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[[Category: Johansson, C]]
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[[Category: Kupinska K]]
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[[Category: Strain-Damerell, C]]
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[[Category: Nowak R]]
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[[Category: Oppermann U]]
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[[Category: Strain-Damerell C]]
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[[Category: Szykowska A]]
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[[Category: Von Delft F]]

Current revision

Crystal structure of the catalytic domain of human JARID1B in complex with D-2-hydroxyglutarate

PDB ID 5fys

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