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1axk

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(New page: 200px<br /><applet load="1axk" size="450" color="white" frame="true" align="right" spinBox="true" caption="1axk, resolution 2.1&Aring;" /> '''ENGINEERED BACILLUS B...)
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[[Image:1axk.gif|left|200px]]<br /><applet load="1axk" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1axk, resolution 2.1&Aring;" />
 
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'''ENGINEERED BACILLUS BIFUNCTIONAL ENZYME GLUXYN-1'''<br />
 
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==Overview==
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==ENGINEERED BACILLUS BIFUNCTIONAL ENZYME GLUXYN-1==
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The 1,3-1,4-beta-glucanase from Bacillus macerans (wtGLU) and the 1, 4-beta-xylanase from Bacillus subtilis (wtXYN) are both single-domain, jellyroll proteins catalyzing similar enzymatic reactions. In the fusion, protein GluXyn-1, the two proteins are joined by insertion of the entire, XYN domain into a surface loop of cpMAC-57, a circularly permuted variant, of wtGLU. GluXyn-1 was generated by protein engineering methods, produced, in Escherichia coli and shown to fold spontaneously and have both, enzymatic activities at wild-type level. The crystal structure of GluXyn-1, was determined at 2.1 A resolution and refined to R = 17.7% and R(free) =, 22.4%. It shows nearly ideal, native-like folding of both protein domains, and a small, but significant hinge bending between the domains. The active, sites are independent and accessible explaining the observed enzymatic, activity. Because in GluXyn-1 the complete XYN domain is inserted into the, compact folding unit of GLU, the wild-type-like activity and tertiary, structure of the latter proves that the folding process of GLU does not, depend on intramolecular interactions that are short-ranged in the, sequence. Insertion fusions of the GluXyn-1 type may prove to be an easy, route toward more stable bifunctional proteins in which the two parts are, more closely associated than in linear end-to-end protein fusions.
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<StructureSection load='1axk' size='340' side='right'caption='[[1axk]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1axk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AXK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AXK FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1axk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1axk OCA], [https://pdbe.org/1axk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1axk RCSB], [https://www.ebi.ac.uk/pdbsum/1axk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1axk ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GUB_PAEMA GUB_PAEMA] [https://www.uniprot.org/uniprot/XYNA_BACSU XYNA_BACSU]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ax/1axk_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1axk ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The 1,3-1,4-beta-glucanase from Bacillus macerans (wtGLU) and the 1, 4-beta-xylanase from Bacillus subtilis (wtXYN) are both single-domain jellyroll proteins catalyzing similar enzymatic reactions. In the fusion protein GluXyn-1, the two proteins are joined by insertion of the entire XYN domain into a surface loop of cpMAC-57, a circularly permuted variant of wtGLU. GluXyn-1 was generated by protein engineering methods, produced in Escherichia coli and shown to fold spontaneously and have both enzymatic activities at wild-type level. The crystal structure of GluXyn-1 was determined at 2.1 A resolution and refined to R = 17.7% and R(free) = 22.4%. It shows nearly ideal, native-like folding of both protein domains and a small, but significant hinge bending between the domains. The active sites are independent and accessible explaining the observed enzymatic activity. Because in GluXyn-1 the complete XYN domain is inserted into the compact folding unit of GLU, the wild-type-like activity and tertiary structure of the latter proves that the folding process of GLU does not depend on intramolecular interactions that are short-ranged in the sequence. Insertion fusions of the GluXyn-1 type may prove to be an easy route toward more stable bifunctional proteins in which the two parts are more closely associated than in linear end-to-end protein fusions.
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==About this Structure==
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Structure and function of the Bacillus hybrid enzyme GluXyn-1: native-like jellyroll fold preserved after insertion of autonomous globular domain.,Ay J, Gotz F, Borriss R, Heinemann U Proc Natl Acad Sci U S A. 1998 Jun 9;95(12):6613-8. PMID:9618460<ref>PMID:9618460</ref>
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1AXK is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] with CA as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1AXK OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structure and function of the Bacillus hybrid enzyme GluXyn-1: native-like jellyroll fold preserved after insertion of autonomous globular domain., Ay J, Gotz F, Borriss R, Heinemann U, Proc Natl Acad Sci U S A. 1998 Jun 9;95(12):6613-8. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9618460 9618460]
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</div>
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<div class="pdbe-citations 1axk" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Ay, J.]]
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[[Category: Ay J]]
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[[Category: Heinemann, U.]]
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[[Category: Heinemann U]]
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[[Category: CA]]
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[[Category: 1]]
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[[Category: 3-1]]
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[[Category: 4-beta-glucanase]]
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[[Category: 4-beta-xylanase]]
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[[Category: bifunctional]]
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[[Category: fusion protein]]
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[[Category: gluxyn-1]]
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[[Category: hybrid enzyme]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 11:11:18 2007''
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Current revision

ENGINEERED BACILLUS BIFUNCTIONAL ENZYME GLUXYN-1

PDB ID 1axk

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