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1cgd
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1cgd" size="450" color="white" frame="true" align="right" spinBox="true" caption="1cgd, resolution 1.85Å" /> '''HYDRATION STRUCTURE ...) |
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| - | [[Image:1cgd.gif|left|200px]]<br /><applet load="1cgd" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1cgd, resolution 1.85Å" /> | ||
| - | '''HYDRATION STRUCTURE OF A COLLAGEN PEPTIDE'''<br /> | ||
| - | == | + | ==HYDRATION STRUCTURE OF A COLLAGEN PEPTIDE== |
| - | BACKGROUND: The collagen triple helix is a unique protein motif defined by | + | <StructureSection load='1cgd' size='340' side='right'caption='[[1cgd]], [[Resolution|resolution]] 1.85Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[1cgd]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CGD FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cgd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgd OCA], [https://pdbe.org/1cgd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cgd RCSB], [https://www.ebi.ac.uk/pdbsum/1cgd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cgd ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | BACKGROUND: The collagen triple helix is a unique protein motif defined by the supercoiling of three polypeptide chains in a polyproline II conformation. It is a major domain of all collagen proteins and is also reported to exist in proteins with host defense function and in several membrane proteins. The triple-helical domain has distinctive properties. Collagen requires a high proportion of the post-translationally modified imino acid 4-hydroxyproline and water to stabilize its conformation and assembly. The crystal structure of a collagen-like peptide determined to 1.85 Angstrum showed that these two features may be related. RESULTS: A detailed analysis of the hydration structure of the collagen-like peptide is presented. The water molecules around the carbonyl and hydroxyprolyl groups show distinctive geometries. There are repetitive patterns of water bridges that link oxygen atoms within a single peptide chain, between different chains and between different triple helices. Overall, the water molecules are organized in a semi-clathrate-like structure that surrounds and interconnects triple helices in the crystal lattice. Hydroxyprolyl groups play a crucial role in the assembly. CONCLUSIONS: The roles of hydroxyproline and hydration are strongly interrelated in the structure of the collagen triple helix. The specific, repetitive water bridges observed in this structure buttress the triple-helical conformation. The extensively ordered hydration structure offers a good model for the interpretation of the experimental results on collagen stability and assembly. | ||
| - | + | Hydration structure of a collagen peptide.,Bella J, Brodsky B, Berman HM Structure. 1995 Sep 15;3(9):893-906. PMID:8535783<ref>PMID:8535783</ref> | |
| - | + | ||
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| - | [[Category: | + | <div class="pdbe-citations 1cgd" style="background-color:#fffaf0;"></div> |
| - | [[Category: Bella | + | == References == |
| - | [[Category: Berman | + | <references/> |
| - | [[Category: Brodsky | + | __TOC__ |
| - | + | </StructureSection> | |
| - | + | [[Category: Large Structures]] | |
| - | + | [[Category: Bella J]] | |
| - | + | [[Category: Berman HM]] | |
| - | + | [[Category: Brodsky B]] | |
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Current revision
HYDRATION STRUCTURE OF A COLLAGEN PEPTIDE
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