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5gnb

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Current revision (11:37, 2 August 2023) (edit) (undo)
 
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<StructureSection load='5gnb' size='340' side='right'caption='[[5gnb]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='5gnb' size='340' side='right'caption='[[5gnb]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5gnb]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GNB OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5GNB FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5gnb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_coronavirus_HKU1_(isolate_N1) Human coronavirus HKU1 (isolate N1)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GNB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GNB FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5gnb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gnb OCA], [http://pdbe.org/5gnb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gnb RCSB], [http://www.ebi.ac.uk/pdbsum/5gnb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gnb ProSAT]</span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5gnb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gnb OCA], [https://pdbe.org/5gnb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5gnb RCSB], [https://www.ebi.ac.uk/pdbsum/5gnb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5gnb ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/SPIKE_CVHN1 SPIKE_CVHN1]] S1 attaches the virion to the cell membrane by interacting with cell receptors, initiating the infection. S2 is a class I viral fusion protein. Under the current model, the protein has at least 3 conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes. Presumably interacts with target cell lipid raft after cell attachment (By similarity).
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[https://www.uniprot.org/uniprot/SPIKE_CVHN1 SPIKE_CVHN1] S1 attaches the virion to the cell membrane by interacting with cell receptors, initiating the infection. S2 is a class I viral fusion protein. Under the current model, the protein has at least 3 conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes. Presumably interacts with target cell lipid raft after cell attachment (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Cui, S]]
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[[Category: Cui S]]
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[[Category: Guan, H]]
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[[Category: Guan H]]
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[[Category: Wang, M]]
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[[Category: Wang M]]
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[[Category: Wojdyla, J A]]
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[[Category: Wojdyla JA]]
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[[Category: Coronavirus spike protein]]
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[[Category: Hku1]]
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[[Category: Receptor binding domain]]
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[[Category: Receptor binding motif]]
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[[Category: S1-ctd]]
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[[Category: Viral protein]]
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[[Category: Virus entry]]
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Current revision

Crystal Structure of the Receptor Binding Domain of the Spike Glycoprotein of Human Betacoronavirus HKU1 (HKU1 1A-CTD, 2.3 angstrom, native-SAD phasing)

PDB ID 5gnb

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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