This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5gnd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:37, 2 August 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Structure of Deg protease HhoA from Synechocystis sp. PCC 6803==
==Structure of Deg protease HhoA from Synechocystis sp. PCC 6803==
-
<StructureSection load='5gnd' size='340' side='right' caption='[[5gnd]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='5gnd' size='340' side='right'caption='[[5gnd]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5gnd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/ ] and [http://en.wikipedia.org/wiki/Escherichia_coli_bl21(de3) Escherichia coli bl21(de3)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GND OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5GND FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5gnd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_BL21(DE3) Escherichia coli BL21(DE3)] and [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803_substr._Kazusa Synechocystis sp. PCC 6803 substr. Kazusa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GND FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5b6l|5b6l]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5gnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gnd OCA], [https://pdbe.org/5gnd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5gnd RCSB], [https://www.ebi.ac.uk/pdbsum/5gnd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5gnd ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5gnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gnd OCA], [http://pdbe.org/5gnd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gnd RCSB], [http://www.ebi.ac.uk/pdbsum/5gnd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gnd ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/HHOA_SYNY3 HHOA_SYNY3]] A putative protease, its function overlaps that of the related putative proteases HhoB and HtrA.<ref>PMID:16912048</ref>
+
[https://www.uniprot.org/uniprot/HHOA_SYNY3 HHOA_SYNY3] A putative protease, its function overlaps that of the related putative proteases HhoB and HtrA.<ref>PMID:16912048</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Dong, W]]
+
[[Category: Large Structures]]
-
[[Category: Liu, L]]
+
[[Category: Synechocystis sp. PCC 6803 substr. Kazusa]]
-
[[Category: Wang, J]]
+
[[Category: Dong W]]
-
[[Category: Hydrolase]]
+
[[Category: Liu L]]
-
[[Category: Serine protease]]
+
[[Category: Wang J]]

Current revision

Structure of Deg protease HhoA from Synechocystis sp. PCC 6803

PDB ID 5gnd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5gnd"
Personal tools