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1b71

From Proteopedia

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[[Image:1b71.gif|left|200px]]
 
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{{Structure
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==RUBRERYTHRIN==
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|PDB= 1b71 |SIZE=350|CAPTION= <scene name='initialview01'>1b71</scene>, resolution 1.9&Aring;
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<StructureSection load='1b71' size='340' side='right'caption='[[1b71]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
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<table><tr><td colspan='2'>[[1b71]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B71 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1B71 FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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|GENE=
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1b71 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b71 OCA], [https://pdbe.org/1b71 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1b71 RCSB], [https://www.ebi.ac.uk/pdbsum/1b71 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1b71 ProSAT]</span></td></tr>
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|RELATEDENTRY=
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1b71 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b71 OCA], [http://www.ebi.ac.uk/pdbsum/1b71 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1b71 RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/RUBY_DESVH RUBY_DESVH] May provide oxidative stress protection via catalytic reduction of intracellular hydrogen peroxide (By similarity).
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== Evolutionary Conservation ==
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'''RUBRERYTHRIN'''
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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==About this Structure==
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b7/1b71_consurf.spt"</scriptWhenChecked>
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1B71 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B71 OCA].
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==Reference==
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</jmolCheckbox>
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Alternative metal-binding sites in rubrerythrin., Sieker LC, Holmes M, Le Trong I, Turley S, Santarsiero BD, Liu MY, LeGall J, Stenkamp RE, Nat Struct Biol. 1999 Apr;6(4):308-9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10201393 10201393]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1b71 ConSurf].
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[[Category: Desulfovibrio vulgaris]]
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<div style="clear:both"></div>
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[[Category: Single protein]]
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__TOC__
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[[Category: Holmes, M.]]
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</StructureSection>
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[[Category: Legall, J.]]
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[[Category: Desulfovibrio vulgaris str. Hildenborough]]
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[[Category: Liu, M Y.]]
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[[Category: Large Structures]]
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[[Category: Santarsiero, B D.]]
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[[Category: Holmes M]]
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[[Category: Sieker, L C.]]
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[[Category: Le Trong I]]
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[[Category: Stenkap, R E.]]
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[[Category: Legall J]]
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[[Category: Trong, I Le.]]
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[[Category: Liu M-Y]]
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[[Category: Turley, S.]]
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[[Category: Santarsiero BD]]
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[[Category: electron transport]]
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[[Category: Sieker LC]]
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[[Category: ferroxidase]]
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[[Category: Stenkamp RE]]
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[[Category: iron]]
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[[Category: Turley S]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 18:54:59 2008''
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Current revision

RUBRERYTHRIN

PDB ID 1b71

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