This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1bs7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:42, 9 August 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1bs7' size='340' side='right'caption='[[1bs7]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
<StructureSection load='1bs7' size='340' side='right'caption='[[1bs7]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1bs7]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BS7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BS7 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1bs7]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BS7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BS7 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1bs4|1bs4]], [[1bs5|1bs5]], [[1bs6|1bs6]], [[1bs8|1bs8]], [[1bsz|1bsz]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Formylmethionine_deformylase Formylmethionine deformylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.31 3.5.1.31] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bs7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bs7 OCA], [https://pdbe.org/1bs7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bs7 RCSB], [https://www.ebi.ac.uk/pdbsum/1bs7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bs7 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bs7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bs7 OCA], [https://pdbe.org/1bs7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bs7 RCSB], [https://www.ebi.ac.uk/pdbsum/1bs7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bs7 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/DEF_ECOLI DEF_ECOLI]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
+
[https://www.uniprot.org/uniprot/DEF_ECOLI DEF_ECOLI] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 34: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Formylmethionine deformylase]]
+
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Becker, A]]
+
[[Category: Becker A]]
-
[[Category: Groche, D]]
+
[[Category: Groche D]]
-
[[Category: Kabsch, W]]
+
[[Category: Kabsch W]]
-
[[Category: Schlichting, I]]
+
[[Category: Schlichting I]]
-
[[Category: Schultz, S]]
+
[[Category: Schultz S]]
-
[[Category: Wagner, A F.V]]
+
[[Category: Wagner AFV]]
-
[[Category: Hydrolase]]
+
-
[[Category: Iron metalloprotease]]
+
-
[[Category: Protein synthesis]]
+

Current revision

PEPTIDE DEFORMYLASE AS NI2+ CONTAINING FORM

PDB ID 1bs7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1bs7"
Personal tools