This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1c40

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:47, 9 August 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==BAR-HEADED GOOSE HEMOGLOBIN (AQUOMET FORM)==
==BAR-HEADED GOOSE HEMOGLOBIN (AQUOMET FORM)==
-
<StructureSection load='1c40' size='340' side='right' caption='[[1c40]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+
<StructureSection load='1c40' size='340' side='right'caption='[[1c40]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1c40]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anser_indicus Anser indicus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1c0h 1c0h]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C40 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C40 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1c40]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Anser_indicus Anser indicus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1c0h 1c0h]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C40 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1C40 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c40 OCA], [http://pdbe.org/1c40 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1c40 RCSB], [http://www.ebi.ac.uk/pdbsum/1c40 PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1c40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c40 OCA], [https://pdbe.org/1c40 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1c40 RCSB], [https://www.ebi.ac.uk/pdbsum/1c40 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1c40 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/HBA_ANSIN HBA_ANSIN]] Involved in oxygen transport from the lung to the various peripheral tissues. [[http://www.uniprot.org/uniprot/HBB_ANSIN HBB_ANSIN]] Involved in oxygen transport from the lung to the various peripheral tissues.
+
[https://www.uniprot.org/uniprot/HBA_ANSIN HBA_ANSIN] Involved in oxygen transport from the lung to the various peripheral tissues.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c4/1c40_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c4/1c40_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1c40 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 35: Line 37:
</StructureSection>
</StructureSection>
[[Category: Anser indicus]]
[[Category: Anser indicus]]
-
[[Category: Hua, Z]]
+
[[Category: Large Structures]]
-
[[Category: Jing, H]]
+
[[Category: Hua Z]]
-
[[Category: Li, S]]
+
[[Category: Jing H]]
-
[[Category: Liu, X]]
+
[[Category: Li S]]
-
[[Category: Lu, G]]
+
[[Category: Liu X]]
-
[[Category: Zhang, R]]
+
[[Category: Lu G]]
-
[[Category: Erythrocyte]]
+
[[Category: Zhang R]]
-
[[Category: Heme]]
+
-
[[Category: Oxygen storage-transport complex]]
+
-
[[Category: Oxygen storage/ transport]]
+
-
[[Category: Oxygen transport]]
+
-
[[Category: Respiratory protein]]
+

Current revision

BAR-HEADED GOOSE HEMOGLOBIN (AQUOMET FORM)

PDB ID 1c40

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools