This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1dvb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:57, 9 August 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==RUBRERYTHRIN==
==RUBRERYTHRIN==
-
<StructureSection load='1dvb' size='340' side='right' caption='[[1dvb]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='1dvb' size='340' side='right'caption='[[1dvb]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1dvb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._hildenborough Desulfovibrio vulgaris str. hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DVB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DVB FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1dvb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DVB FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dvb OCA], [http://pdbe.org/1dvb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dvb RCSB], [http://www.ebi.ac.uk/pdbsum/1dvb PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dvb OCA], [https://pdbe.org/1dvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dvb RCSB], [https://www.ebi.ac.uk/pdbsum/1dvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dvb ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RUBY_DESVH RUBY_DESVH]] May provide oxidative stress protection via catalytic reduction of intracellular hydrogen peroxide (By similarity).
+
[https://www.uniprot.org/uniprot/RUBY_DESVH RUBY_DESVH] May provide oxidative stress protection via catalytic reduction of intracellular hydrogen peroxide (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/1dvb_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/1dvb_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 31: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Desulfovibrio vulgaris str. hildenborough]]
+
[[Category: Desulfovibrio vulgaris str. Hildenborough]]
-
[[Category: Holmes, M]]
+
[[Category: Large Structures]]
-
[[Category: Legall, J]]
+
[[Category: Holmes M]]
-
[[Category: Liu, M Y]]
+
[[Category: Le Trong I]]
-
[[Category: Sieker, L C]]
+
[[Category: Legall J]]
-
[[Category: Stenkamp, R E]]
+
[[Category: Liu MY]]
-
[[Category: Trong, I Le]]
+
[[Category: Sieker LC]]
-
[[Category: Turley, S]]
+
[[Category: Stenkamp RE]]
-
[[Category: Electron transport]]
+
[[Category: Turley S]]
-
[[Category: Ferroxidase]]
+
-
[[Category: Iron]]
+

Current revision

RUBRERYTHRIN

PDB ID 1dvb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1dvb"
Personal tools