This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1i6n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:22, 9 August 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==1.8 A Crystal structure of IOLI protein with a binding zinc atom==
==1.8 A Crystal structure of IOLI protein with a binding zinc atom==
-
<StructureSection load='1i6n' size='340' side='right' caption='[[1i6n]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='1i6n' size='340' side='right'caption='[[1i6n]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1i6n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I6N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1I6N FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1i6n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I6N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1I6N FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1i60|1i60]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1i6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i6n OCA], [https://pdbe.org/1i6n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1i6n RCSB], [https://www.ebi.ac.uk/pdbsum/1i6n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1i6n ProSAT], [https://www.topsan.org/Proteins/MCSG/1i6n TOPSAN]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">IOLI OR B65B ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1i6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i6n OCA], [http://pdbe.org/1i6n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1i6n RCSB], [http://www.ebi.ac.uk/pdbsum/1i6n PDBsum], [http://www.topsan.org/Proteins/MCSG/1i6n TOPSAN]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/IOLI_BACSU IOLI_BACSU]] Involved in the reversible interconverion of 2-keto-myo-inositol (2KMI, inosose or 2,4,6/3,5-pentahydroxycyclohexanone) to 1-keto-D-chiro-inositol (1KDCI or 2,3,5/4,6-pentahydroxycyclohexanone).
+
[https://www.uniprot.org/uniprot/IOLI_BACSU IOLI_BACSU] Involved in the reversible interconverion of 2-keto-myo-inositol (2KMI, inosose or 2,4,6/3,5-pentahydroxycyclohexanone) to 1-keto-D-chiro-inositol (1KDCI or 2,3,5/4,6-pentahydroxycyclohexanone).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i6/1i6n_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i6/1i6n_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 23: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus globigii migula 1900]]
+
[[Category: Bacillus subtilis]]
-
[[Category: Alkire, R]]
+
[[Category: Large Structures]]
-
[[Category: Collart, F]]
+
[[Category: Alkire R]]
-
[[Category: Dementiva, I]]
+
[[Category: Collart F]]
-
[[Category: Dieckman, L]]
+
[[Category: Dementiva I]]
-
[[Category: Joachimiak, A]]
+
[[Category: Dieckman L]]
-
[[Category: Korolev, O]]
+
[[Category: Joachimiak A]]
-
[[Category: Structural genomic]]
+
[[Category: Korolev O]]
-
[[Category: Maltsev, N]]
+
[[Category: Maltsev N]]
-
[[Category: Quaite-Randall, E]]
+
[[Category: Quaite-Randall E]]
-
[[Category: Zhang, R G]]
+
[[Category: Zhang RG]]
-
[[Category: Beta barrel]]
+
-
[[Category: Mcsg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Unknown function]]
+

Current revision

1.8 A Crystal structure of IOLI protein with a binding zinc atom

PDB ID 1i6n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools