This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1joi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:27, 9 August 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1joi.jpg|left|200px]]
 
-
<!--
+
==STRUCTURE OF PSEUDOMONAS FLUORESCENS HOLO AZURIN==
-
The line below this paragraph, containing "STRUCTURE_1joi", creates the "Structure Box" on the page.
+
<StructureSection load='1joi' size='340' side='right'caption='[[1joi]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1joi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_fluorescens_bv._A Pseudomonas fluorescens bv. A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JOI FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
-
{{STRUCTURE_1joi| PDB=1joi | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1joi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1joi OCA], [https://pdbe.org/1joi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1joi RCSB], [https://www.ebi.ac.uk/pdbsum/1joi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1joi ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AZUR_PSEFA AZUR_PSEFA]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jo/1joi_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1joi ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The Azurin Pseudomones fluorescens has been crystallized in the presence of ammonium sulfate and Tris buffer at pH 7.5. The crystals diffract to 2.05 A using a FAST system. The space group is P2(1)2(1)2(1) with a = 31.95, b = 43.78, and c = 78.81 A.
-
'''STRUCTURE OF PSEUDOMONAS FLUORESCENS HOLO AZURIN'''
+
Crystallization and preliminary crystallographic studies of the crystals of the azurin Pseudomonas fluorescens.,Zhu DW, Dahms T, Willis K, Szabo AG, Lee X Arch Biochem Biophys. 1994 Feb 1;308(2):469-70. PMID:8109977<ref>PMID:8109977</ref>
-
 
+
-
 
+
-
==Overview==
+
-
The Azurin Pseudomones fluorescens has been crystallized in the presence of ammonium sulfate and Tris buffer at pH 7.5. The crystals diffract to 2.05 A using a FAST system. The space group is P2(1)2(1)2(1) with a = 31.95, b = 43.78, and c = 78.81 A.
+
-
==About this Structure==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
1JOI is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas Pseudomonas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOI OCA].
+
</div>
 +
<div class="pdbe-citations 1joi" style="background-color:#fffaf0;"></div>
-
==Reference==
+
==See Also==
-
Crystallization and preliminary crystallographic studies of the crystals of the azurin Pseudomonas fluorescens., Zhu DW, Dahms T, Willis K, Szabo AG, Lee X, Arch Biochem Biophys. 1994 Feb 1;308(2):469-70. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8109977 8109977]
+
*[[Azurin|Azurin]]
-
[[Category: Pseudomonas]]
+
*[[Azurin 3D structures|Azurin 3D structures]]
-
[[Category: Single protein]]
+
== References ==
-
[[Category: Biesterfedlt, J.]]
+
<references/>
-
[[Category: Dahms, T.]]
+
__TOC__
-
[[Category: Lanthier, P H.]]
+
</StructureSection>
-
[[Category: Lee, X.]]
+
[[Category: Large Structures]]
-
[[Category: Szabo, A G.]]
+
[[Category: Pseudomonas fluorescens bv. A]]
-
[[Category: Ton-that, H.]]
+
[[Category: Biesterfedlt J]]
-
[[Category: Yachuchi, M.]]
+
[[Category: Dahms T]]
-
[[Category: Zhu, D W.]]
+
[[Category: Lanthier PH]]
-
[[Category: Azurin]]
+
[[Category: Lee X]]
-
[[Category: Electron transfer]]
+
[[Category: Szabo AG]]
-
[[Category: Electron transport]]
+
[[Category: Ton-that H]]
-
[[Category: Fluorescence quenching]]
+
[[Category: Yachuchi M]]
-
[[Category: Phospholipase a2]]
+
[[Category: Zhu D-W]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 21:30:46 2008''
+

Current revision

STRUCTURE OF PSEUDOMONAS FLUORESCENS HOLO AZURIN

PDB ID 1joi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools