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1ubp

From Proteopedia

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[[Image:1ubp.gif|left|200px]]
 
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{{Structure
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==CRYSTAL STRUCTURE OF UREASE FROM BACILLUS PASTEURII INHIBITED WITH BETA-MERCAPTOETHANOL AT 1.65 ANGSTROMS RESOLUTION==
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|PDB= 1ubp |SIZE=350|CAPTION= <scene name='initialview01'>1ubp</scene>, resolution 1.65&Aring;
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<StructureSection load='1ubp' size='340' side='right'caption='[[1ubp]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
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|SITE= <scene name='pdbsite=BM2:A+Second+Molecule+Of+Beta-Mercaptoethanol+Is+Involved+In+...'>BM2</scene> and <scene name='pdbsite=CAT:The+Ureolytic+Dinuclear+Nickel2+Metallocenter+Is+Inhibit+...'>CAT</scene>
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>
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<table><tr><td colspan='2'>[[1ubp]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UBP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UBP FirstGlance]. <br>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Urease Urease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.5 3.5.1.5] </span>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
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|GENE=
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=CXM:N-CARBOXYMETHIONINE'>CXM</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ubp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ubp OCA], [https://pdbe.org/1ubp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ubp RCSB], [https://www.ebi.ac.uk/pdbsum/1ubp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ubp ProSAT]</span></td></tr>
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|RELATEDENTRY=
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ubp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ubp OCA], [http://www.ebi.ac.uk/pdbsum/1ubp PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ubp RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/URE2_SPOPA URE2_SPOPA]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ub/1ubp_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ubp ConSurf].
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<div style="clear:both"></div>
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'''CRYSTAL STRUCTURE OF UREASE FROM BACILLUS PASTEURII INHIBITED WITH BETA-MERCAPTOETHANOL AT 1.65 ANGSTROMS RESOLUTION'''
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==See Also==
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*[[Urease 3D structures|Urease 3D structures]]
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__TOC__
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==About this Structure==
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</StructureSection>
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1UBP is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UBP OCA].
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[[Category: Large Structures]]
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[[Category: Protein complex]]
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[[Category: Sporosarcina pasteurii]]
[[Category: Sporosarcina pasteurii]]
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[[Category: Urease]]
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[[Category: Benini S]]
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[[Category: Benini, S.]]
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[[Category: Ciurli S]]
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[[Category: Ciurli, S.]]
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[[Category: Mangani S]]
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[[Category: Mangani, S.]]
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[[Category: Rypniewski WR]]
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[[Category: Rypniewski, W R.]]
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[[Category: Wilson KS]]
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[[Category: Wilson, K S.]]
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[[Category: bacillus pasteurii]]
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[[Category: beta-mercaptoethanol]]
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[[Category: hydrolase]]
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[[Category: nickel]]
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[[Category: urease]]
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[[Category: x-ray]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:08:03 2008''
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Current revision

CRYSTAL STRUCTURE OF UREASE FROM BACILLUS PASTEURII INHIBITED WITH BETA-MERCAPTOETHANOL AT 1.65 ANGSTROMS RESOLUTION

PDB ID 1ubp

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