This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1vew

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /> <applet load="1vew" size="450" color="white" frame="true" align="right" spinBox="true" caption="1vew, resolution 2.1&Aring;" /> '''MANGANESE SUPEROXIDE...)
Current revision (06:37, 9 August 2023) (edit) (undo)
 
(20 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1vew.gif|left|200px]]<br />
 
-
<applet load="1vew" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1vew, resolution 2.1&Aring;" />
 
-
'''MANGANESE SUPEROXIDE DISMUTASE FROM ESCHERICHIA COLI'''<br />
 
-
==About this Structure==
+
==MANGANESE SUPEROXIDE DISMUTASE FROM ESCHERICHIA COLI==
-
1VEW is a [[http://en.wikipedia.org/wiki/Single_protein Single protein]] structure of sequence from [[http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]] with MN and OH as [[http://en.wikipedia.org/wiki/ligands ligands]]. Active as [[http://en.wikipedia.org/wiki/ ]], with EC number [[http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1]]. Full crystallographic information is available from [[http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1VEW OCA]].
+
<StructureSection load='1vew' size='340' side='right'caption='[[1vew]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
[[Category: Escherichia coli]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[1vew]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VEW FirstGlance]. <br>
-
[[Category: Baker, E.N.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
[[Category: Baker, H.M.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene></td></tr>
-
[[Category: Edwards, R.A.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vew FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vew OCA], [https://pdbe.org/1vew PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vew RCSB], [https://www.ebi.ac.uk/pdbsum/1vew PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vew ProSAT]</span></td></tr>
-
[[Category: Jameson, G.B.]]
+
</table>
-
[[Category: Whittaker, J.W.]]
+
== Function ==
-
[[Category: Whittaker, M.M.]]
+
[https://www.uniprot.org/uniprot/SODM_ECOLI SODM_ECOLI] Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.
-
[[Category: MN]]
+
== Evolutionary Conservation ==
-
[[Category: OH]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: dna binding]]
+
Check<jmol>
-
[[Category: manganese enzyme]]
+
<jmolCheckbox>
-
[[Category: metalloprotein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ve/1vew_consurf.spt"</scriptWhenChecked>
-
[[Category: oxidoreductase]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: superoxide dismutase]]
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vew ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Oct 29 18:41:56 2007''
+
==See Also==
 +
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Escherichia coli]]
 +
[[Category: Large Structures]]
 +
[[Category: Baker EN]]
 +
[[Category: Baker HM]]
 +
[[Category: Edwards RA]]
 +
[[Category: Jameson GB]]
 +
[[Category: Whittaker JW]]
 +
[[Category: Whittaker MM]]

Current revision

MANGANESE SUPEROXIDE DISMUTASE FROM ESCHERICHIA COLI

PDB ID 1vew

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools