This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1xvr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:12, 9 August 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==echinomycin (CGTACG)2 complex==
==echinomycin (CGTACG)2 complex==
-
<StructureSection load='1xvr' size='340' side='right' caption='[[1xvr]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
+
<StructureSection load='1xvr' size='340' side='right'caption='[[1xvr]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1xvr]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_echinatus Streptomyces echinatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XVR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XVR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1xvr]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_echinatus Streptomyces echinatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XVR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XVR FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=QUI:2-CARBOXYQUINOXALINE'>QUI</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DSN:D-SERINE'>DSN</scene>, <scene name='pdbligand=MVA:N-METHYLVALINE'>MVA</scene>, <scene name='pdbligand=N2C:N,S-DIMETHYLCYSTEINE'>N2C</scene>, <scene name='pdbligand=NCY:N-METHYLCYSTEINE'>NCY</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DSN:D-SERINE'>DSN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MVA:N-METHYLVALINE'>MVA</scene>, <scene name='pdbligand=N2C:N,S-DIMETHYLCYSTEINE'>N2C</scene>, <scene name='pdbligand=NCY:N-METHYLCYSTEINE'>NCY</scene>, <scene name='pdbligand=QUI:2-CARBOXYQUINOXALINE'>QUI</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[185d|185d]], [[193d|193d]], [[1pfe|1pfe]], [[1vs2|1vs2]], [[1xvk|1xvk]], [[1xvn|1xvn]], [[2adw|2adw]], [[2da8|2da8]], [[3go3|3go3]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xvr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xvr OCA], [https://pdbe.org/1xvr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xvr RCSB], [https://www.ebi.ac.uk/pdbsum/1xvr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xvr ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xvr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xvr OCA], [http://pdbe.org/1xvr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xvr RCSB], [http://www.ebi.ac.uk/pdbsum/1xvr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xvr ProSAT]</span></td></tr>
+
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 22: Line 21:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Streptomyces echinatus]]
[[Category: Streptomyces echinatus]]
-
[[Category: Cuesta-Seijo, J A]]
+
[[Category: Cuesta-Seijo JA]]
-
[[Category: Sheldrick, G M]]
+
[[Category: Sheldrick GM]]
-
[[Category: Antibiotic]]
+
-
[[Category: Antitumor]]
+
-
[[Category: Bisintercalator]]
+
-
[[Category: Depsipeptide]]
+
-
[[Category: Dna-antibiotic complex]]
+
-
[[Category: Hoogsteen basepair]]
+
-
[[Category: Quinoxaline]]
+
-
[[Category: Thioacetal]]
+

Current revision

echinomycin (CGTACG)2 complex

PDB ID 1xvr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools