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1yod

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(New page: 200px<br /><applet load="1yod" size="450" color="white" frame="true" align="right" spinBox="true" caption="1yod, resolution 1.80&Aring;" /> '''Crystal structure of...)
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[[Image:1yod.gif|left|200px]]<br /><applet load="1yod" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1yod, resolution 1.80&Aring;" />
 
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'''Crystal structure of a water soluble analog of phospholamban'''<br />
 
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==Overview==
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==Crystal structure of a water soluble analog of phospholamban==
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Phospholamban (PLB) is a pentameric transmembrane protein that regulates, the Ca(2+)-dependent ATPase SERCA2a in sarcoplasmic reticulum membranes., We previously described the computational design of a water-soluble, variant of phospholamban, WSPLB, which reproduced many of the structural, and functional properties of the native membrane-soluble protein. While, the full-length WSPLB forms a pentamer in solution, a truncated variant, forms very stable tetramers. To obtain insight into the tetramer-pentamer, cytoplasmic switch, we solved the crystal structure of the truncated, construct, WSPLB 21-52. This peptide has a heptad sequence repeat with Leu, residues at a- and Ile at d-positions from residues 31-52. The crystal, structure revealed that WSPLB 21-52 adopted an antiparallel tetrameric, coiled coil. This topology contrasts with the parallel topology of an, analogue of the coiled-coil of GCN4 with the same Leu(a) Ile(d) repeat., Analysis of these structures revealed how the nature of the partially, exposed residues at e- and g-positions influence the topology formed by, the bundle. We also constructed a model for the pentameric form of PLB, using the coiled-coil parameters derived from a single monomer in the, tetrameric structure. This model suggests that both buried and interfacial, hydrogen bonds are important for stabilizing the parallel pentamer.
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<StructureSection load='1yod' size='340' side='right'caption='[[1yod]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1yod]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YOD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YOD FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yod FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yod OCA], [https://pdbe.org/1yod PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yod RCSB], [https://www.ebi.ac.uk/pdbsum/1yod PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yod ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Phospholamban (PLB) is a pentameric transmembrane protein that regulates the Ca(2+)-dependent ATPase SERCA2a in sarcoplasmic reticulum membranes. We previously described the computational design of a water-soluble variant of phospholamban, WSPLB, which reproduced many of the structural and functional properties of the native membrane-soluble protein. While the full-length WSPLB forms a pentamer in solution, a truncated variant forms very stable tetramers. To obtain insight into the tetramer-pentamer cytoplasmic switch, we solved the crystal structure of the truncated construct, WSPLB 21-52. This peptide has a heptad sequence repeat with Leu residues at a- and Ile at d-positions from residues 31-52. The crystal structure revealed that WSPLB 21-52 adopted an antiparallel tetrameric coiled coil. This topology contrasts with the parallel topology of an analogue of the coiled-coil of GCN4 with the same Leu(a) Ile(d) repeat. Analysis of these structures revealed how the nature of the partially exposed residues at e- and g-positions influence the topology formed by the bundle. We also constructed a model for the pentameric form of PLB using the coiled-coil parameters derived from a single monomer in the tetrameric structure. This model suggests that both buried and interfacial hydrogen bonds are important for stabilizing the parallel pentamer.
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==About this Structure==
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X-ray structure of a water-soluble analog of the membrane protein phospholamban: sequence determinants defining the topology of tetrameric and pentameric coiled coils.,Slovic AM, Stayrook SE, North B, Degrado WF J Mol Biol. 2005 May 6;348(3):777-87. PMID:15826670<ref>PMID:15826670</ref>
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1YOD is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1YOD OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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X-ray structure of a water-soluble analog of the membrane protein phospholamban: sequence determinants defining the topology of tetrameric and pentameric coiled coils., Slovic AM, Stayrook SE, North B, Degrado WF, J Mol Biol. 2005 May 6;348(3):777-87. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15826670 15826670]
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</div>
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[[Category: Protein complex]]
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<div class="pdbe-citations 1yod" style="background-color:#fffaf0;"></div>
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[[Category: DeGrado, W.F.]]
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[[Category: North, B.]]
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[[Category: Slovic, A.M.]]
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[[Category: Stayrook, S.E.]]
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[[Category: protein design]]
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[[Category: water-soluble]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 04:26:42 2007''
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==See Also==
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*[[Phospholamban|Phospholamban]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: DeGrado WF]]
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[[Category: North B]]
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[[Category: Slovic AM]]
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[[Category: Stayrook SE]]

Current revision

Crystal structure of a water soluble analog of phospholamban

PDB ID 1yod

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