This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1in5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:35, 16 August 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==THERMOGOTA MARITIMA RUVB A156S MUTANT==
==THERMOGOTA MARITIMA RUVB A156S MUTANT==
-
<StructureSection load='1in5' size='340' side='right' caption='[[1in5]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='1in5' size='340' side='right'caption='[[1in5]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1in5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IN5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IN5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1in5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IN5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IN5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1in4|1in4]], [[1in6|1in6]], [[1in7|1in7]], [[1in8|1in8]], [[1j7k|1j7k]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RuvB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1in5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1in5 OCA], [https://pdbe.org/1in5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1in5 RCSB], [https://www.ebi.ac.uk/pdbsum/1in5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1in5 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1in5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1in5 OCA], [http://pdbe.org/1in5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1in5 RCSB], [http://www.ebi.ac.uk/pdbsum/1in5 PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RUVB_THEMA RUVB_THEMA]] The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing (By similarity).
+
[https://www.uniprot.org/uniprot/RUVB_THEMA RUVB_THEMA] The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/in/1in5_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/in/1in5_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 31: Line 31:
==See Also==
==See Also==
-
*[[Helicase|Helicase]]
+
*[[Helicase 3D structures|Helicase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 43589]]
+
[[Category: Large Structures]]
-
[[Category: Clancy, S B]]
+
[[Category: Thermotoga maritima]]
-
[[Category: Gonzalez, S]]
+
[[Category: Clancy SB]]
-
[[Category: Putnam, C D]]
+
[[Category: Gonzalez S]]
-
[[Category: Tainer, J A]]
+
[[Category: Putnam CD]]
-
[[Category: Tsuruta, H]]
+
[[Category: Tainer JA]]
-
[[Category: Wetmur, J G]]
+
[[Category: Tsuruta H]]
-
[[Category: Aaa+-class atpase]]
+
[[Category: Wetmur JG]]
-
[[Category: Arginine finger]]
+
-
[[Category: Branch migration]]
+
-
[[Category: Dna binding protein]]
+
-
[[Category: Holliday junction]]
+
-
[[Category: Sensor 1]]
+
-
[[Category: Sensor 2]]
+
-
[[Category: Walker some]]
+
-
[[Category: Walker b]]
+
-
[[Category: Winged-helix domain]]
+

Current revision

THERMOGOTA MARITIMA RUVB A156S MUTANT

PDB ID 1in5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1in5"
Personal tools