1kfc

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(New page: 200px<br /><applet load="1kfc" size="450" color="white" frame="true" align="right" spinBox="true" caption="1kfc, resolution 1.50&Aring;" /> '''CRYSTAL STRUCTURE OF...)
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[[Image:1kfc.jpg|left|200px]]<br /><applet load="1kfc" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1kfc, resolution 1.50&Aring;" />
 
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'''CRYSTAL STRUCTURE OF ALPHAT183V MUTANT OF TRYPTOPHAN SYNTHASE FROM SALMONELLA TYPHIMURIUM With Indole Propanol Phosphate'''<br />
 
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==Overview==
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==CRYSTAL STRUCTURE OF ALPHAT183V MUTANT OF TRYPTOPHAN SYNTHASE FROM SALMONELLA TYPHIMURIUM With Indole Propanol Phosphate==
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The catalytic activity and substrate channeling of the pyridoxal, 5'-phosphate-dependent tryptophan synthase alpha(2)beta(2) complex is, regulated by allosteric interactions that modulate the switching of the, enzyme between open, low activity and closed, high activity states during, the catalytic cycle. The highly conserved alphaThr183 residue is part of, loop alphaL6 and is located next to the alpha-active site and forms part, of the alpha-beta subunit interface. The role of the interactions of, alphaThr183 in alpha-site catalysis and allosteric regulation was, investigated by analyzing the kinetics and crystal structures of the, isosteric mutant alphaThr183Val. The mutant displays strongly impaired, allosteric alpha-beta communication, and the catalytic activity of the, alpha-reaction is reduced one hundred fold, whereas the beta-activity is, not affected. The structural work establishes that the basis for the, missing inter-subunit signaling is the lack of loop alphaL6 closure even, in the presence of the alpha-subunit ligands, 3-indolyl-D-glycerol, 3'-phosphate, or 3-indolylpropanol 3'-phosphate. The structural basis for, the reduced alpha-activity has its origins in the missing hydrogen bond, between alphaThr183 and the catalytic residue, alphaAsp60.
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<StructureSection load='1kfc' size='340' side='right'caption='[[1kfc]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1kfc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium] and [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KFC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KFC FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IPL:INDOLE-3-PROPANOL+PHOSPHATE'>IPL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kfc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kfc OCA], [https://pdbe.org/1kfc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kfc RCSB], [https://www.ebi.ac.uk/pdbsum/1kfc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kfc ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/TRPA_SALTY TRPA_SALTY] The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kf/1kfc_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kfc ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The catalytic activity and substrate channeling of the pyridoxal 5'-phosphate-dependent tryptophan synthase alpha(2)beta(2) complex is regulated by allosteric interactions that modulate the switching of the enzyme between open, low activity and closed, high activity states during the catalytic cycle. The highly conserved alphaThr183 residue is part of loop alphaL6 and is located next to the alpha-active site and forms part of the alpha-beta subunit interface. The role of the interactions of alphaThr183 in alpha-site catalysis and allosteric regulation was investigated by analyzing the kinetics and crystal structures of the isosteric mutant alphaThr183Val. The mutant displays strongly impaired allosteric alpha-beta communication, and the catalytic activity of the alpha-reaction is reduced one hundred fold, whereas the beta-activity is not affected. The structural work establishes that the basis for the missing inter-subunit signaling is the lack of loop alphaL6 closure even in the presence of the alpha-subunit ligands, 3-indolyl-D-glycerol 3'-phosphate, or 3-indolylpropanol 3'-phosphate. The structural basis for the reduced alpha-activity has its origins in the missing hydrogen bond between alphaThr183 and the catalytic residue, alphaAsp60.
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==About this Structure==
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On the role of alphaThr183 in the allosteric regulation and catalytic mechanism of tryptophan synthase.,Kulik V, Weyand M, Seidel R, Niks D, Arac D, Dunn MF, Schlichting I J Mol Biol. 2002 Dec 6;324(4):677-90. PMID:12460570<ref>PMID:12460570</ref>
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1KFC is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium] and [http://en.wikipedia.org/wiki/Salmonella_typhimurium_lt2 Salmonella typhimurium lt2] with NA, IPL and PLP as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Tryptophan_synthase Tryptophan synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.20 4.2.1.20] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1KFC OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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On the role of alphaThr183 in the allosteric regulation and catalytic mechanism of tryptophan synthase., Kulik V, Weyand M, Seidel R, Niks D, Arac D, Dunn MF, Schlichting I, J Mol Biol. 2002 Dec 6;324(4):677-90. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12460570 12460570]
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</div>
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[[Category: Protein complex]]
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<div class="pdbe-citations 1kfc" style="background-color:#fffaf0;"></div>
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[[Category: Salmonella typhimurium]]
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[[Category: Salmonella typhimurium lt2]]
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[[Category: Tryptophan synthase]]
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[[Category: Arac, D.]]
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[[Category: Dunn, M.F.]]
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[[Category: Kulik, V.]]
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[[Category: Niks, D.]]
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[[Category: Schlichting, I.]]
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[[Category: Siedel, R.]]
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[[Category: Weyand, M.]]
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[[Category: IPL]]
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[[Category: NA]]
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[[Category: PLP]]
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[[Category: helix]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 19:09:30 2007''
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==See Also==
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*[[Tryptophan synthase 3D structures|Tryptophan synthase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
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[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
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[[Category: Arac D]]
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[[Category: Dunn MF]]
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[[Category: Kulik V]]
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[[Category: Niks D]]
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[[Category: Schlichting I]]
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[[Category: Siedel R]]
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[[Category: Weyand M]]

Current revision

CRYSTAL STRUCTURE OF ALPHAT183V MUTANT OF TRYPTOPHAN SYNTHASE FROM SALMONELLA TYPHIMURIUM With Indole Propanol Phosphate

PDB ID 1kfc

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