This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1kh0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:58, 16 August 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Accurate Computer Base Design of a New Backbone Conformation in the Second Turn of Protein L==
==Accurate Computer Base Design of a New Backbone Conformation in the Second Turn of Protein L==
-
<StructureSection load='1kh0' size='340' side='right' caption='[[1kh0]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='1kh0' size='340' side='right'caption='[[1kh0]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1kh0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Finegoldia_magna_atcc_29328 Finegoldia magna atcc 29328]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KH0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KH0 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1kh0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Finegoldia_magna_ATCC_29328 Finegoldia magna ATCC 29328]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KH0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KH0 FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1hz5|1hz5]], [[1hz6|1hz6]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kh0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kh0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1kh0 RCSB], [http://www.ebi.ac.uk/pdbsum/1kh0 PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kh0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kh0 OCA], [https://pdbe.org/1kh0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kh0 RCSB], [https://www.ebi.ac.uk/pdbsum/1kh0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kh0 ProSAT]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q51912_FINMA Q51912_FINMA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kh/1kh0_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kh/1kh0_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kh0 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 24: Line 27:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 1kh0" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Finegoldia magna atcc 29328]]
+
[[Category: Finegoldia magna ATCC 29328]]
-
[[Category: Baker, D.]]
+
[[Category: Large Structures]]
-
[[Category: Kim, D E.]]
+
[[Category: Baker D]]
-
[[Category: Kuhlman, B.]]
+
[[Category: Kim DE]]
-
[[Category: Neill, J W.O.]]
+
[[Category: Kuhlman B]]
-
[[Category: Zhang, K Y.]]
+
[[Category: O'Neill JW]]
-
[[Category: Computational based protein design]]
+
[[Category: Zhang KY]]
-
[[Category: Extensive amino acid mutations.]]
+
-
[[Category: Protein binding]]
+
-
[[Category: Protein l b1 domain]]
+
-
[[Category: Type 1' beta turn]]
+

Current revision

Accurate Computer Base Design of a New Backbone Conformation in the Second Turn of Protein L

PDB ID 1kh0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1kh0"
Personal tools