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1na8
From Proteopedia
(Difference between revisions)
(New page: 200px<br /> <applet load="1na8" size="450" color="white" frame="true" align="right" spinBox="true" caption="1na8, resolution 2.30Å" /> '''Crystal structure o...) |
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| - | [[Image:1na8.gif|left|200px]]<br /> | ||
| - | <applet load="1na8" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1na8, resolution 2.30Å" /> | ||
| - | '''Crystal structure of ADP-ribosylation factor binding protein GGA1'''<br /> | ||
| - | == | + | ==Crystal structure of ADP-ribosylation factor binding protein GGA1== |
| - | The adaptor appendage domains are believed to act as binding platforms for | + | <StructureSection load='1na8' size='340' side='right'caption='[[1na8]], [[Resolution|resolution]] 2.30Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[1na8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NA8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NA8 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1na8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1na8 OCA], [https://pdbe.org/1na8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1na8 RCSB], [https://www.ebi.ac.uk/pdbsum/1na8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1na8 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/GGA1_HUMAN GGA1_HUMAN] Plays a role in protein sorting and trafficking between the trans-Golgi network (TGN) and endosomes. Mediates the ARF-dependent recruitment of clathrin to the TGN and binds ubiquitinated proteins and membrane cargo molecules with a cytosolic acidic cluster-dileucine (AC-LL) motif.<ref>PMID:11301005</ref> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/na/1na8_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1na8 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The adaptor appendage domains are believed to act as binding platforms for coated vesicle accessory proteins. Using glutathione S-transferase pulldowns from pig brain cytosol, we find three proteins that can bind to the appendage domains of both the AP-1 gamma subunit and the GGAs: gamma-synergin and two novel proteins, p56 and p200. p56 elicited better antibodies than p200 and was generally more tractable. Although p56 and gamma-synergin bind to both GGA and gamma appendages in vitro, immunofluorescence labeling of nocodazole-treated cells shows that p56 colocalizes with GGAs on TGN46-positive membranes, whereas gamma-synergin colocalizes with AP-1 primarily on a different membrane compartment. Furthermore, in AP-1-deficient cells, p56 remains membrane-associated whereas gamma-synergin becomes cytosolic. Thus, p56 and gamma-synergin show very strong preferences for GGAs and AP-1, respectively, in vivo. However, the GGA and gamma appendages share the same fold as determined by x-ray crystallography, and mutagenesis reveals that the same amino acids contribute to their binding sites. By overexpressing wild-type GGA and gamma appendage domains in cells, we can drive p56 and gamma-synergin, respectively, into the cytosol, suggesting a possible mechanism for selectively disrupting the two pathways. | ||
| - | + | Binding partners for the COOH-terminal appendage domains of the GGAs and gamma-adaptin.,Lui WW, Collins BM, Hirst J, Motley A, Millar C, Schu P, Owen DJ, Robinson MS Mol Biol Cell. 2003 Jun;14(6):2385-98. Epub 2003 Mar 20. PMID:12808037<ref>PMID:12808037</ref> | |
| - | + | ||
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| + | <div class="pdbe-citations 1na8" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Collins | + | [[Category: Collins BM]] |
| - | [[Category: Hirst | + | [[Category: Hirst J]] |
| - | [[Category: Lui | + | [[Category: Lui WW]] |
| - | [[Category: Millar | + | [[Category: Millar C]] |
| - | [[Category: Motley | + | [[Category: Motley A]] |
| - | [[Category: Owen | + | [[Category: Owen DJ]] |
| - | [[Category: Robinson | + | [[Category: Robinson MS]] |
| - | [[Category: Schu | + | [[Category: Schu P]] |
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Current revision
Crystal structure of ADP-ribosylation factor binding protein GGA1
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Categories: Homo sapiens | Large Structures | Collins BM | Hirst J | Lui WW | Millar C | Motley A | Owen DJ | Robinson MS | Schu P

