This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1na8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /> <applet load="1na8" size="450" color="white" frame="true" align="right" spinBox="true" caption="1na8, resolution 2.30&Aring;" /> '''Crystal structure o...)
Current revision (09:17, 16 August 2023) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1na8.gif|left|200px]]<br />
 
-
<applet load="1na8" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1na8, resolution 2.30&Aring;" />
 
-
'''Crystal structure of ADP-ribosylation factor binding protein GGA1'''<br />
 
-
==Overview==
+
==Crystal structure of ADP-ribosylation factor binding protein GGA1==
-
The adaptor appendage domains are believed to act as binding platforms for, coated vesicle accessory proteins. Using glutathione S-transferase, pulldowns from pig brain cytosol, we find three proteins that can bind to, the appendage domains of both the AP-1 gamma subunit and the GGAs:, gamma-synergin and two novel proteins, p56 and p200. p56 elicited better, antibodies than p200 and was generally more tractable. Although p56 and, gamma-synergin bind to both GGA and gamma appendages in vitro, immunofluorescence labeling of nocodazole-treated cells shows that p56, colocalizes with GGAs on TGN46-positive membranes, whereas gamma-synergin, colocalizes with AP-1 primarily on a different membrane compartment., Furthermore, in AP-1-deficient cells, p56 remains membrane-associated, whereas gamma-synergin becomes cytosolic. Thus, p56 and gamma-synergin, show very strong preferences for GGAs and AP-1, respectively, in vivo., However, the GGA and gamma appendages share the same fold as determined by, x-ray crystallography, and mutagenesis reveals that the same amino acids, contribute to their binding sites. By overexpressing wild-type GGA and, gamma appendage domains in cells, we can drive p56 and gamma-synergin, respectively, into the cytosol, suggesting a possible mechanism for, selectively disrupting the two pathways.
+
<StructureSection load='1na8' size='340' side='right'caption='[[1na8]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1na8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NA8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NA8 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1na8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1na8 OCA], [https://pdbe.org/1na8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1na8 RCSB], [https://www.ebi.ac.uk/pdbsum/1na8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1na8 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GGA1_HUMAN GGA1_HUMAN] Plays a role in protein sorting and trafficking between the trans-Golgi network (TGN) and endosomes. Mediates the ARF-dependent recruitment of clathrin to the TGN and binds ubiquitinated proteins and membrane cargo molecules with a cytosolic acidic cluster-dileucine (AC-LL) motif.<ref>PMID:11301005</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/na/1na8_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1na8 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The adaptor appendage domains are believed to act as binding platforms for coated vesicle accessory proteins. Using glutathione S-transferase pulldowns from pig brain cytosol, we find three proteins that can bind to the appendage domains of both the AP-1 gamma subunit and the GGAs: gamma-synergin and two novel proteins, p56 and p200. p56 elicited better antibodies than p200 and was generally more tractable. Although p56 and gamma-synergin bind to both GGA and gamma appendages in vitro, immunofluorescence labeling of nocodazole-treated cells shows that p56 colocalizes with GGAs on TGN46-positive membranes, whereas gamma-synergin colocalizes with AP-1 primarily on a different membrane compartment. Furthermore, in AP-1-deficient cells, p56 remains membrane-associated whereas gamma-synergin becomes cytosolic. Thus, p56 and gamma-synergin show very strong preferences for GGAs and AP-1, respectively, in vivo. However, the GGA and gamma appendages share the same fold as determined by x-ray crystallography, and mutagenesis reveals that the same amino acids contribute to their binding sites. By overexpressing wild-type GGA and gamma appendage domains in cells, we can drive p56 and gamma-synergin, respectively, into the cytosol, suggesting a possible mechanism for selectively disrupting the two pathways.
-
==About this Structure==
+
Binding partners for the COOH-terminal appendage domains of the GGAs and gamma-adaptin.,Lui WW, Collins BM, Hirst J, Motley A, Millar C, Schu P, Owen DJ, Robinson MS Mol Biol Cell. 2003 Jun;14(6):2385-98. Epub 2003 Mar 20. PMID:12808037<ref>PMID:12808037</ref>
-
1NA8 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1NA8 OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Binding partners for the COOH-terminal appendage domains of the GGAs and gamma-adaptin., Lui WW, Collins BM, Hirst J, Motley A, Millar C, Schu P, Owen DJ, Robinson MS, Mol Biol Cell. 2003 Jun;14(6):2385-98. Epub 2003 Mar 20. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12808037 12808037]
+
</div>
 +
<div class="pdbe-citations 1na8" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Collins, B.M.]]
+
[[Category: Collins BM]]
-
[[Category: Hirst, J.]]
+
[[Category: Hirst J]]
-
[[Category: Lui, W.W.]]
+
[[Category: Lui WW]]
-
[[Category: Millar, C.]]
+
[[Category: Millar C]]
-
[[Category: Motley, A.]]
+
[[Category: Motley A]]
-
[[Category: Owen, D.J.]]
+
[[Category: Owen DJ]]
-
[[Category: Robinson, M.S.]]
+
[[Category: Robinson MS]]
-
[[Category: Schu, P.]]
+
[[Category: Schu P]]
-
[[Category: appendage]]
+
-
[[Category: beta-sandwich]]
+
-
[[Category: clathrin-adaptor]]
+
-
[[Category: gga]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 18:19:42 2007''
+

Current revision

Crystal structure of ADP-ribosylation factor binding protein GGA1

PDB ID 1na8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools