This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1npn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:23, 16 August 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of a copper reconstituted H145A mutant of nitrite reductase from Alcaligenes faecalis==
==Crystal structure of a copper reconstituted H145A mutant of nitrite reductase from Alcaligenes faecalis==
-
<StructureSection load='1npn' size='340' side='right' caption='[[1npn]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='1npn' size='340' side='right'caption='[[1npn]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1npn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Alcfa Alcfa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NPN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1NPN FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1npn]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Alcaligenes_faecalis Alcaligenes faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NPN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NPN FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1npj|1npj]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NIRK OR NIR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=511 ALCFA])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1npn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1npn OCA], [https://pdbe.org/1npn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1npn RCSB], [https://www.ebi.ac.uk/pdbsum/1npn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1npn ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrite_reductase_(NO-forming) Nitrite reductase (NO-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.1 1.7.2.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1npn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1npn OCA], [http://pdbe.org/1npn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1npn RCSB], [http://www.ebi.ac.uk/pdbsum/1npn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1npn ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NIR_ALCFA NIR_ALCFA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/np/1npn_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/np/1npn_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 29: Line 29:
</div>
</div>
<div class="pdbe-citations 1npn" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 1npn" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Nitrite reductase 3D structures|Nitrite reductase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Alcfa]]
+
[[Category: Alcaligenes faecalis]]
-
[[Category: Boulanger, M J]]
+
[[Category: Large Structures]]
-
[[Category: Canters, G W]]
+
[[Category: Boulanger MJ]]
-
[[Category: Fittipaldi, M]]
+
[[Category: Canters GW]]
-
[[Category: Huber, M]]
+
[[Category: Fittipaldi M]]
-
[[Category: Molon, A]]
+
[[Category: Huber M]]
-
[[Category: Murphy, M E]]
+
[[Category: Molon A]]
-
[[Category: Verbeet, M P]]
+
[[Category: Murphy ME]]
-
[[Category: Wijma, H J]]
+
[[Category: Verbeet MP]]
-
[[Category: Copper nitrite reductase]]
+
[[Category: Wijma HJ]]
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of a copper reconstituted H145A mutant of nitrite reductase from Alcaligenes faecalis

PDB ID 1npn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools