1qx4

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(New page: 200px<br /><applet load="1qx4" size="450" color="white" frame="true" align="right" spinBox="true" caption="1qx4, resolution 1.8&Aring;" /> '''Structrue of S127P mu...)
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[[Image:1qx4.jpg|left|200px]]<br /><applet load="1qx4" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1qx4, resolution 1.8&Aring;" />
 
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'''Structrue of S127P mutant of cytochrome b5 reductase'''<br />
 
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==Overview==
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==Structrue of S127P mutant of cytochrome b5 reductase==
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Methemoglobinemia, the first hereditary disease to be identified that, involved an enzyme deficiency, has been ascribed to mutations in the, enzyme cytochrome b(5) reductase. A variety of defects in either the, erythrocytic or microsomal forms of the enzyme have been identified that, give rise to the type I or type II variant of the disease, respectively., The positions of the methemoglobinemia-causing mutations are scattered, throughout the protein sequence, but the majority of the nontruncated, mutants that produce type II symptoms occur close to the flavin adenine, dinucleotide (FAD) cofactor binding site. While X-ray structures have been, determined for the soluble, flavin-containing diaphorase domains of the, rat and pig enzymes, no X-ray or NMR structure has been described for the, human enzyme or any of the methemoglobinemia variants. S127P, a mutant, that causes type II methemoglobinemia, was the first to be positively, identified and have its spectroscopic and kinetic properties characterized, that revealed altered nicotinamide adenine dinucleotide hydride (NADH), substrate binding behavior. To understand these changes at a structural, level, we have determined the structure of the S127P mutant of rat, cytochrome b(5) reductase to 1.8 A resolution, providing the first, structural snapshot of a cytochrome b(5) reductase mutant that causes, methemoglobinemia. The high-resolution structure revealed that the, adenosine diphosphate (ADP) moiety of the FAD prosthetic group is, displaced into the corresponding ADP binding site of the physiological, substrate, NADH, thus acting as a substrate inhibitor which is consistent, with both the spectroscopic and kinetic data.
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<StructureSection load='1qx4' size='340' side='right'caption='[[1qx4]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1qx4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QX4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QX4 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qx4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qx4 OCA], [https://pdbe.org/1qx4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qx4 RCSB], [https://www.ebi.ac.uk/pdbsum/1qx4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qx4 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NB5R3_RAT NB5R3_RAT] Desaturation and elongation of fatty acids, cholesterol biosynthesis, drug metabolism, and, in erythrocyte, methemoglobin reduction.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qx/1qx4_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qx4 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Methemoglobinemia, the first hereditary disease to be identified that involved an enzyme deficiency, has been ascribed to mutations in the enzyme cytochrome b(5) reductase. A variety of defects in either the erythrocytic or microsomal forms of the enzyme have been identified that give rise to the type I or type II variant of the disease, respectively. The positions of the methemoglobinemia-causing mutations are scattered throughout the protein sequence, but the majority of the nontruncated mutants that produce type II symptoms occur close to the flavin adenine dinucleotide (FAD) cofactor binding site. While X-ray structures have been determined for the soluble, flavin-containing diaphorase domains of the rat and pig enzymes, no X-ray or NMR structure has been described for the human enzyme or any of the methemoglobinemia variants. S127P, a mutant that causes type II methemoglobinemia, was the first to be positively identified and have its spectroscopic and kinetic properties characterized that revealed altered nicotinamide adenine dinucleotide hydride (NADH) substrate binding behavior. To understand these changes at a structural level, we have determined the structure of the S127P mutant of rat cytochrome b(5) reductase to 1.8 A resolution, providing the first structural snapshot of a cytochrome b(5) reductase mutant that causes methemoglobinemia. The high-resolution structure revealed that the adenosine diphosphate (ADP) moiety of the FAD prosthetic group is displaced into the corresponding ADP binding site of the physiological substrate, NADH, thus acting as a substrate inhibitor which is consistent with both the spectroscopic and kinetic data.
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==About this Structure==
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The structure of the S127P mutant of cytochrome b5 reductase that causes methemoglobinemia shows the AMP moiety of the flavin occupying the substrate binding site.,Bewley MC, Davis CA, Marohnic CC, Taormina D, Barber MJ Biochemistry. 2003 Nov 18;42(45):13145-51. PMID:14609324<ref>PMID:14609324</ref>
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1QX4 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus] with FAD as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Cytochrome-b5_reductase Cytochrome-b5 reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.6.2.2 1.6.2.2] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1QX4 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The structure of the S127P mutant of cytochrome b5 reductase that causes methemoglobinemia shows the AMP moiety of the flavin occupying the substrate binding site., Bewley MC, Davis CA, Marohnic CC, Taormina D, Barber MJ, Biochemistry. 2003 Nov 18;42(45):13145-51. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=14609324 14609324]
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</div>
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[[Category: Cytochrome-b5 reductase]]
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<div class="pdbe-citations 1qx4" style="background-color:#fffaf0;"></div>
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[[Category: Rattus norvegicus]]
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[[Category: Single protein]]
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[[Category: Barber, M.J.]]
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[[Category: Bewley, M.C.]]
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[[Category: Davis, C.A.]]
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[[Category: Marohnic, C.C.]]
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[[Category: Taormina, D.]]
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[[Category: FAD]]
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[[Category: flavin flexibility]]
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[[Category: methemoglobinemia]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 01:05:07 2007''
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==See Also==
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*[[NADH-cytochrome b5 reductase|NADH-cytochrome b5 reductase]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Rattus norvegicus]]
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[[Category: Barber MJ]]
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[[Category: Bewley MC]]
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[[Category: Davis CA]]
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[[Category: Marohnic CC]]
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[[Category: Taormina D]]

Current revision

Structrue of S127P mutant of cytochrome b5 reductase

PDB ID 1qx4

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