This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1rzo
From Proteopedia
(Difference between revisions)
| (7 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Agglutinin from Ricinus communis with galactoaza== | ==Agglutinin from Ricinus communis with galactoaza== | ||
| - | <StructureSection load='1rzo' size='340' side='right' caption='[[1rzo]], [[Resolution|resolution]] 2.63Å' scene=''> | + | <StructureSection load='1rzo' size='340' side='right'caption='[[1rzo]], [[Resolution|resolution]] 2.63Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1rzo]] is a 4 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1rzo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Ricinus_communis Ricinus communis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RZO FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.63Å</td></tr> |
| - | <tr><td class="sblockLbl"><b>[[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rzo OCA], [https://pdbe.org/1rzo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rzo RCSB], [https://www.ebi.ac.uk/pdbsum/1rzo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rzo ProSAT]</span></td></tr> | |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </table> |
| - | <table> | + | == Function == |
| + | [https://www.uniprot.org/uniprot/AGGL_RICCO AGGL_RICCO] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rz/1rzo_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rz/1rzo_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rzo ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Agglutinin 3D structures|Agglutinin 3D structures]] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Ricinus communis]] | [[Category: Ricinus communis]] | ||
| - | + | [[Category: Betzel C]] | |
| - | [[Category: Betzel | + | [[Category: Gabdoulkhakov AG]] |
| - | [[Category: Gabdoulkhakov | + | [[Category: Konareva N]] |
| - | [[Category: Konareva | + | [[Category: Krauspenhaar R]] |
| - | [[Category: Krauspenhaar | + | [[Category: Mikhailov AM]] |
| - | [[Category: Mikhailov | + | [[Category: Nikonov SV]] |
| - | [[Category: Nikonov | + | [[Category: Savochkina Y]] |
| - | [[Category: Savochkina | + | [[Category: Stoeva S]] |
| - | [[Category: Stoeva | + | [[Category: Voelter W]] |
| - | [[Category: Voelter | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Agglutinin from Ricinus communis with galactoaza
| |||||||||||
