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1s5f

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(New page: 200px<br /><applet load="1s5f" size="450" color="white" frame="true" align="right" spinBox="true" caption="1s5f, resolution 2.60&Aring;" /> '''Cholera holotoxin, C...)
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[[Image:1s5f.jpg|left|200px]]<br /><applet load="1s5f" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1s5f, resolution 2.60&Aring;" />
 
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'''Cholera holotoxin, Crystal form 2'''<br />
 
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==Overview==
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==Cholera holotoxin, Crystal form 2==
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Cholera toxin (CT) is a heterohexameric bacterial protein toxin belonging, to a larger family of A/B ADP-ribosylating toxins. Each of these toxins, undergoes limited proteolysis and/or disulfide bond reduction to form the, enzymatically active toxic fragment. Nicking and reduction render both CT, and the closely related heat-labile enterotoxin from Escherichia coli (LT), unstable in solution, thus far preventing a full structural understanding, of the conformational changes resulting from toxin activation. We present, the first structural glimpse of an active CT in structures from three, crystal forms of a single-site A-subunit CT variant, Y30S, which requires, no activational modifications for full activity. We also redetermined the, structure of the wild-type, proenzyme CT from two crystal forms, both of, which exhibit (i) better geometry and (ii) a different A2 "tail", conformation than the previously determined structure [Zhang et al. (1995), J. Mol. Biol. 251, 563-573]. Differences between wild-type CT and active, CTY30S are observed in A-subunit loop regions that had been previously, implicated in activation by analysis of the structure of an LT A-subunit, R7K variant [van den Akker et al. (1995) Biochemistry 34, 10996-11004]., The 25-36 activation loop is disordered in CTY30S, while the 47-56 active, site loop displays varying degrees of order in the three CTY30S, structures, suggesting that disorder in the activation loop predisposes, the active site loop to a greater degree of flexibility than that found in, unactivated wild-type CT. On the basis of these six new views of the CT, holotoxin, we propose a model for how the activational modifications, experienced by wild-type CT are communicated to the active site.
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<StructureSection load='1s5f' size='340' side='right'caption='[[1s5f]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1s5f]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S5F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1S5F FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1s5f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s5f OCA], [https://pdbe.org/1s5f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1s5f RCSB], [https://www.ebi.ac.uk/pdbsum/1s5f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1s5f ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CHTA_VIBCH CHTA_VIBCH] The A1 chain catalyzes the ADP-ribosylation of Gs alpha, a GTP-binding regulatory protein, to activate the adenylate cyclase. This leads to an overproduction of cAMP and eventually to a hypersecretion of chloride and bicarbonate followed by water, resulting in the characteristic cholera stool. The A2 chain tethers A1 to the pentameric ring.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/s5/1s5f_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1s5f ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cholera toxin (CT) is a heterohexameric bacterial protein toxin belonging to a larger family of A/B ADP-ribosylating toxins. Each of these toxins undergoes limited proteolysis and/or disulfide bond reduction to form the enzymatically active toxic fragment. Nicking and reduction render both CT and the closely related heat-labile enterotoxin from Escherichia coli (LT) unstable in solution, thus far preventing a full structural understanding of the conformational changes resulting from toxin activation. We present the first structural glimpse of an active CT in structures from three crystal forms of a single-site A-subunit CT variant, Y30S, which requires no activational modifications for full activity. We also redetermined the structure of the wild-type, proenzyme CT from two crystal forms, both of which exhibit (i) better geometry and (ii) a different A2 "tail" conformation than the previously determined structure [Zhang et al. (1995) J. Mol. Biol. 251, 563-573]. Differences between wild-type CT and active CTY30S are observed in A-subunit loop regions that had been previously implicated in activation by analysis of the structure of an LT A-subunit R7K variant [van den Akker et al. (1995) Biochemistry 34, 10996-11004]. The 25-36 activation loop is disordered in CTY30S, while the 47-56 active site loop displays varying degrees of order in the three CTY30S structures, suggesting that disorder in the activation loop predisposes the active site loop to a greater degree of flexibility than that found in unactivated wild-type CT. On the basis of these six new views of the CT holotoxin, we propose a model for how the activational modifications experienced by wild-type CT are communicated to the active site.
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==About this Structure==
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Crystal structures of an intrinsically active cholera toxin mutant yield insight into the toxin activation mechanism.,O'Neal CJ, Amaya EI, Jobling MG, Holmes RK, Hol WG Biochemistry. 2004 Apr 6;43(13):3772-82. PMID:15049684<ref>PMID:15049684</ref>
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1S5F is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae] with GAL and NA as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/NAD(+)--diphthamide_ADP-ribosyltransferase NAD(+)--diphthamide ADP-ribosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.36 2.4.2.36] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1S5F OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structures of an intrinsically active cholera toxin mutant yield insight into the toxin activation mechanism., O'Neal CJ, Amaya EI, Jobling MG, Holmes RK, Hol WG, Biochemistry. 2004 Apr 6;43(13):3772-82. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15049684 15049684]
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</div>
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[[Category: NAD(+)--diphthamide ADP-ribosyltransferase]]
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<div class="pdbe-citations 1s5f" style="background-color:#fffaf0;"></div>
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[[Category: Protein complex]]
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[[Category: Vibrio cholerae]]
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[[Category: Amaya, E.I.]]
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[[Category: Hol, W.G.]]
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[[Category: Holmes, R.K.]]
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[[Category: Jobling, M.G.]]
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[[Category: Neal, C.J.O.]]
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[[Category: GAL]]
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[[Category: NA]]
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[[Category: ab5 toxins]]
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[[Category: adp ribose transferases]]
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[[Category: cholera toxin]]
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[[Category: heat-labile enterotoxin]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 02:07:23 2007''
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==See Also==
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*[[Cholera toxin 3D structures|Cholera toxin 3D structures]]
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*[[User:David Solfiell/sandbox 1|User:David Solfiell/sandbox 1]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Vibrio cholerae]]
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[[Category: Amaya EI]]
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[[Category: Hol WG]]
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[[Category: Holmes RK]]
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[[Category: Jobling MG]]
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[[Category: O'Neal CJ]]

Current revision

Cholera holotoxin, Crystal form 2

PDB ID 1s5f

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