This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1svd
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1svd" size="450" color="white" frame="true" align="right" spinBox="true" caption="1svd, resolution 1.80Å" /> '''The structure of Hal...) |
|||
| (14 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1svd.gif|left|200px]]<br /><applet load="1svd" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1svd, resolution 1.80Å" /> | ||
| - | '''The structure of Halothiobacillus neapolitanus RuBisCo'''<br /> | ||
| - | == | + | ==The structure of Halothiobacillus neapolitanus RuBisCo== |
| - | + | <StructureSection load='1svd' size='340' side='right'caption='[[1svd]], [[Resolution|resolution]] 1.80Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1svd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Halothiobacillus_neapolitanus Halothiobacillus neapolitanus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SVD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SVD FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1svd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1svd OCA], [https://pdbe.org/1svd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1svd RCSB], [https://www.ebi.ac.uk/pdbsum/1svd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1svd ProSAT]</span></td></tr> | |
| - | [ | + | </table> |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/RBL1_HALNC RBL1_HALNC] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.[HAMAP-Rule:MF_01338] | |
| - | [[ | + | == Evolutionary Conservation == |
| - | [ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[ | + | Check<jmol> |
| - | [ | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sv/1svd_consurf.spt"</scriptWhenChecked> | |
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1svd ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| + | *[[RuBisCO 3D structures|RuBisCO 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Halothiobacillus neapolitanus]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Cannon G]] | ||
| + | [[Category: Kerfeld CA]] | ||
| + | [[Category: Pashkov I]] | ||
| + | [[Category: Sawaya MR]] | ||
| + | [[Category: Tran K]] | ||
| + | [[Category: Williams E]] | ||
| + | [[Category: Yeates TO]] | ||
Current revision
The structure of Halothiobacillus neapolitanus RuBisCo
| |||||||||||
