This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1t2f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:24, 23 August 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Human B lactate dehydrogenase complexed with NAD+ and 4-hydroxy-1,2,5-oxadiazole-3-carboxylic acid==
==Human B lactate dehydrogenase complexed with NAD+ and 4-hydroxy-1,2,5-oxadiazole-3-carboxylic acid==
-
<StructureSection load='1t2f' size='340' side='right' caption='[[1t2f]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
+
<StructureSection load='1t2f' size='340' side='right'caption='[[1t2f]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1t2f]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T2F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1T2F FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1t2f]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T2F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T2F FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=OXQ:4-HYDROXY-1,2,5-OXADIAZOLE-3-CARBOXYLIC+ACID'>OXQ</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ldg|1ldg]], [[1t24|1t24]], [[1t25|1t25]], [[1t26|1t26]], [[1t2c|1t2c]], [[1t2d|1t2d]], [[1t2e|1t2e]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=OXQ:4-HYDROXY-1,2,5-OXADIAZOLE-3-CARBOXYLIC+ACID'>OXQ</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LDHB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t2f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t2f OCA], [https://pdbe.org/1t2f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t2f RCSB], [https://www.ebi.ac.uk/pdbsum/1t2f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t2f ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-lactate_dehydrogenase L-lactate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.27 1.1.1.27] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t2f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t2f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1t2f RCSB], [http://www.ebi.ac.uk/pdbsum/1t2f PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LDHB_HUMAN LDHB_HUMAN]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t2/1t2f_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t2/1t2f_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t2f ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 27: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 1t2f" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Lactate Dehydrogenase|Lactate Dehydrogenase]]
+
*[[Lactate dehydrogenase 3D structures|Lactate dehydrogenase 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 35: Line 37:
</StructureSection>
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: L-lactate dehydrogenase]]
+
[[Category: Large Structures]]
-
[[Category: Barros, D]]
+
[[Category: Barros D]]
-
[[Category: Brady, R L]]
+
[[Category: Brady RL]]
-
[[Category: Cameron, A]]
+
[[Category: Cameron A]]
-
[[Category: Croft, S L]]
+
[[Category: Croft SL]]
-
[[Category: Easton, A]]
+
[[Category: De Las Heras FG]]
-
[[Category: Gabarro, R]]
+
[[Category: Easton A]]
-
[[Category: Gamo, F J]]
+
[[Category: Gabarro R]]
-
[[Category: Garcia-Ochoa, S]]
+
[[Category: Gamo FJ]]
-
[[Category: Heras, F G.De Las]]
+
[[Category: Garcia-Ochoa S]]
-
[[Category: Kendrick, H]]
+
[[Category: Kendrick H]]
-
[[Category: Lavandera, J L]]
+
[[Category: Lavandera JL]]
-
[[Category: Leon, L]]
+
[[Category: Leon L]]
-
[[Category: Mallo, A]]
+
[[Category: Mallo A]]
-
[[Category: Martin, J J]]
+
[[Category: Martin JJ]]
-
[[Category: Read, J]]
+
[[Category: Read J]]
-
[[Category: Risco, F]]
+
[[Category: Risco F]]
-
[[Category: Ruiz, J R]]
+
[[Category: Ruiz JR]]
-
[[Category: Sanz, L]]
+
[[Category: Sanz L]]
-
[[Category: Sessions, R B]]
+
[[Category: Sessions RB]]
-
[[Category: Tranter, R]]
+
[[Category: Tranter R]]
-
[[Category: Vivas, L]]
+
[[Category: Vivas L]]
-
[[Category: Winter, V J]]
+
[[Category: Winter VJ]]
-
[[Category: Oxidoreductase]]
+
-
[[Category: Protein-ligand complex]]
+

Current revision

Human B lactate dehydrogenase complexed with NAD+ and 4-hydroxy-1,2,5-oxadiazole-3-carboxylic acid

PDB ID 1t2f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools