This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1u5j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:38, 23 August 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Propionibacterium shermanii transcarboxylase 5S subunit, Met186Ile==
==Propionibacterium shermanii transcarboxylase 5S subunit, Met186Ile==
-
<StructureSection load='1u5j' size='340' side='right' caption='[[1u5j]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
+
<StructureSection load='1u5j' size='340' side='right'caption='[[1u5j]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1u5j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"propionibacterium_shermanii"_van_niel_1928 "propionibacterium shermanii" van niel 1928]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U5J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U5J FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1u5j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Propionibacterium_freudenreichii_subsp._shermanii Propionibacterium freudenreichii subsp. shermanii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U5J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U5J FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1rqb|1rqb]], [[1rqe|1rqe]], [[1rqh|1rqh]], [[1rr2|1rr2]], [[1sh3|1sh3]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u5j OCA], [https://pdbe.org/1u5j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u5j RCSB], [https://www.ebi.ac.uk/pdbsum/1u5j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u5j ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">5S ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1752 "Propionibacterium shermanii" van Niel 1928])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methylmalonyl-CoA_carboxytransferase Methylmalonyl-CoA carboxytransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.3.1 2.1.3.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u5j OCA], [http://pdbe.org/1u5j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u5j RCSB], [http://www.ebi.ac.uk/pdbsum/1u5j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1u5j ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/5S_PROFR 5S_PROFR]] The 5S subunit specifically catalyzes the transfer of the carboxyl group from biotin of the 1.3S subunit to pyruvate to form oxaloacetate and 1.3S biotin.
+
[https://www.uniprot.org/uniprot/5S_PROFR 5S_PROFR] The 5S subunit specifically catalyzes the transfer of the carboxyl group from biotin of the 1.3S subunit to pyruvate to form oxaloacetate and 1.3S biotin.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u5/1u5j_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u5/1u5j_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 36: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Propionibacterium shermanii van niel 1928]]
+
[[Category: Large Structures]]
-
[[Category: Methylmalonyl-CoA carboxytransferase]]
+
[[Category: Propionibacterium freudenreichii subsp. shermanii]]
-
[[Category: Antony, L]]
+
[[Category: Antony L]]
-
[[Category: Carey, P R]]
+
[[Category: Carey PR]]
-
[[Category: Hall, P R]]
+
[[Category: Hall PR]]
-
[[Category: Pusztai-Carey, M]]
+
[[Category: Pusztai-Carey M]]
-
[[Category: Yee, V C]]
+
[[Category: Yee VC]]
-
[[Category: Zheng, R]]
+
[[Category: Zheng R]]
-
[[Category: Carbamylated lysine]]
+
-
[[Category: Cobalt]]
+
-
[[Category: Tim-barrel]]
+
-
[[Category: Transcarboxylase]]
+
-
[[Category: Transferase]]
+

Current revision

Propionibacterium shermanii transcarboxylase 5S subunit, Met186Ile

PDB ID 1u5j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1u5j"
Personal tools