This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1xi9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:45, 23 August 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1xi9.jpg|left|200px]]
 
-
{{Structure
+
==Alanine aminotransferase from Pyrococcus furiosus Pfu-1397077-001==
-
|PDB= 1xi9 |SIZE=350|CAPTION= <scene name='initialview01'>1xi9</scene>, resolution 2.33&Aring;
+
<StructureSection load='1xi9' size='340' side='right'caption='[[1xi9]], [[Resolution|resolution]] 2.33&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=PLP:PYRIDOXAL-5'-PHOSPHATE'>PLP</scene>
+
<table><tr><td colspan='2'>[[1xi9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XI9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XI9 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.33&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xi9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xi9 OCA], [https://pdbe.org/1xi9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xi9 RCSB], [https://www.ebi.ac.uk/pdbsum/1xi9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xi9 ProSAT], [https://www.topsan.org/Proteins/SECSG/1xi9 TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Alanine aminotransferase from Pyrococcus furiosus Pfu-1397077-001'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9P9M8_9EURY Q9P9M8_9EURY]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1XI9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XI9 OCA].
+
Check<jmol>
-
[[Category: Pyrococcus furiosus dsm 3638]]
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xi/1xi9_consurf.spt"</scriptWhenChecked>
-
[[Category: Adams, M W.W.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Brereton, P S.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Chang, S H.]]
+
</jmolCheckbox>
-
[[Category: Chen, L.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xi9 ConSurf].
-
[[Category: II, F L.Poole.]]
+
<div style="clear:both"></div>
-
[[Category: III, W B.Arendall.]]
+
__TOC__
-
[[Category: Izumi, M.]]
+
</StructureSection>
-
[[Category: Jr., F E.Jenney.]]
+
[[Category: Large Structures]]
-
[[Category: Lee, D.]]
+
[[Category: Pyrococcus furiosus DSM 3638]]
-
[[Category: Lee, H S.]]
+
[[Category: Adams MWW]]
-
[[Category: Lin, D.]]
+
[[Category: Arendall III WB]]
-
[[Category: Liu, Z J.]]
+
[[Category: Brereton PS]]
-
[[Category: Richardson, D C.]]
+
[[Category: Chang S-H]]
-
[[Category: Richardson, J S.]]
+
[[Category: Chen L]]
-
[[Category: Rose, J P.]]
+
[[Category: Izumi M]]
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
[[Category: Jenney Jr FE]]
-
[[Category: Shah, A.]]
+
[[Category: Lee D]]
-
[[Category: Shah, C.]]
+
[[Category: Lee H-S]]
-
[[Category: Sugar, F J.]]
+
[[Category: Lin D]]
-
[[Category: Tempel, W.]]
+
[[Category: Liu Z-J]]
-
[[Category: Wang, B C.]]
+
[[Category: Poole II FL]]
-
[[Category: Zhou, W.]]
+
[[Category: Richardson DC]]
-
[[Category: PLP]]
+
[[Category: Richardson JS]]
-
[[Category: alanine aminotransferase]]
+
[[Category: Rose JP]]
-
[[Category: hyperthermophile]]
+
[[Category: Shah A]]
-
[[Category: protein structure initiative]]
+
[[Category: Shah C]]
-
[[Category: psi]]
+
[[Category: Sugar FJ]]
-
[[Category: pyrococcus furiosus]]
+
[[Category: Tempel W]]
-
[[Category: secsg]]
+
[[Category: Wang B-C]]
-
[[Category: southeast collaboratory for structural genomic]]
+
[[Category: Zhou W]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:10:11 2008''
+

Current revision

Alanine aminotransferase from Pyrococcus furiosus Pfu-1397077-001

PDB ID 1xi9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1xi9"
Personal tools