This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1xrh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:48, 23 August 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1xrh.gif|left|200px]]<br /><applet load="1xrh" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1xrh, resolution 2.25&Aring;" />
 
-
'''Crystal Structure of Ureidoglycolate Dehydrogenase from Escherichia Coli'''<br />
 
-
==About this Structure==
+
==Crystal Structure of Ureidoglycolate Dehydrogenase from Escherichia Coli==
-
1XRH is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Active as [http://en.wikipedia.org/wiki/Ureidoglycolate_dehydrogenase Ureidoglycolate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.154 1.1.1.154] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRH OCA].
+
<StructureSection load='1xrh' size='340' side='right'caption='[[1xrh]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1xrh]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XRH FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xrh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xrh OCA], [https://pdbe.org/1xrh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xrh RCSB], [https://www.ebi.ac.uk/pdbsum/1xrh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xrh ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1xrh TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ALLD_ECOLI ALLD_ECOLI] Involved in the anaerobic utilization of allantoin.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xr/1xrh_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xrh ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Ureidoglycolate dehydrogenase]]
+
[[Category: Burley SK]]
-
[[Category: Burley, S K.]]
+
[[Category: Kniewel R]]
-
[[Category: Kniewel, R.]]
+
[[Category: Lima CD]]
-
[[Category: Lima, C D.]]
+
[[Category: Rajashankar KR]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
-
[[Category: Rajashankar, K R.]]
+
-
[[Category: new york structural genomix research consortium]]
+
-
[[Category: psi]]
+
-
[[Category: structural genomics; protein structure initiative; nysgxrc; t1456; alld; glxb8; b0517; ureidoglycolate dehydrogenase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:57:54 2008''
+

Current revision

Crystal Structure of Ureidoglycolate Dehydrogenase from Escherichia Coli

PDB ID 1xrh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools