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1y3v

From Proteopedia

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[[Image:1y3v.gif|left|200px]]
 
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{{Structure
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==Trypsin Inhibitor Complex==
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|PDB= 1y3v |SIZE=350|CAPTION= <scene name='initialview01'>1y3v</scene>, resolution 1.60&Aring;
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<StructureSection load='1y3v' size='340' side='right'caption='[[1y3v]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UIR:(1R,3AS,4R,8AS,8BR)-4-(2-BENZO[1,3]DIOXOL-5-YL-1-CYCLOPROPYL-3-OXO-DECAHYDRO-PYRROLO[3,4-A]PYRROLIZIN-4-YL)-BENZAMIDINE'>UIR</scene>
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<table><tr><td colspan='2'>[[1y3v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y3V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y3V FirstGlance]. <br>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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|GENE=
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UIR:(1R,3AS,4R,8AS,8BR)-4-(2-BENZO[1,3]DIOXOL-5-YL-1-CYCLOPROPYL-3-OXO-DECAHYDRO-PYRROLO[3,4-A]PYRROLIZIN-4-YL)-BENZAMIDINE'>UIR</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y3v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y3v OCA], [https://pdbe.org/1y3v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y3v RCSB], [https://www.ebi.ac.uk/pdbsum/1y3v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y3v ProSAT]</span></td></tr>
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|RELATEDENTRY=[[1y3u|1Y3U]]
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y3v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y3v OCA], [http://www.ebi.ac.uk/pdbsum/1y3v PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1y3v RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/TRY1_BOVIN TRY1_BOVIN]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y3/1y3v_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y3v ConSurf].
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<div style="clear:both"></div>
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'''Trypsin Inhibitor Complex'''
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==See Also==
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*[[Trypsin|Trypsin]]
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*[[Trypsin 3D structures|Trypsin 3D structures]]
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==About this Structure==
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__TOC__
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1Y3V is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y3V OCA].
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</StructureSection>
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==Reference==
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A simple protocol to estimate differences in protein binding affinity for enantiomers without prior resolution of racemates., Fokkens J, Klebe G, Angew Chem Int Ed Engl. 2006 Jan 30;45(6):985-9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16374786 16374786]
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[[Category: Bos taurus]]
[[Category: Bos taurus]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Trypsin]]
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[[Category: Fokkens J]]
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[[Category: Fokkens, J.]]
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[[Category: Klebe G]]
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[[Category: Klebe, G.]]
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[[Category: 6 stranded beta-sheet]]
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[[Category: barrel]]
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[[Category: inhibitor complex]]
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[[Category: trypsin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:58:29 2008''
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Current revision

Trypsin Inhibitor Complex

PDB ID 1y3v

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