This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1y7w

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:53, 23 August 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of a halotolerant carbonic anhydrase from Dunaliella salina==
==Crystal structure of a halotolerant carbonic anhydrase from Dunaliella salina==
-
<StructureSection load='1y7w' size='340' side='right' caption='[[1y7w]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
+
<StructureSection load='1y7w' size='340' side='right'caption='[[1y7w]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1y7w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Dunaliella_salina Dunaliella salina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y7W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y7W FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1y7w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Dunaliella_salina Dunaliella salina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y7W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y7W FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dCA II ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3046 Dunaliella salina])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Carbonate_dehydratase Carbonate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.1 4.2.1.1] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y7w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y7w OCA], [https://pdbe.org/1y7w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y7w RCSB], [https://www.ebi.ac.uk/pdbsum/1y7w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y7w ProSAT], [https://www.topsan.org/Proteins/ISPC/1y7w TOPSAN]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y7w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y7w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1y7w RCSB], [http://www.ebi.ac.uk/pdbsum/1y7w PDBsum], [http://www.topsan.org/Proteins/ISPC/1y7w TOPSAN]</span></td></tr>
+
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 12: Line 12:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y7/1y7w_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y7/1y7w_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y7w ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 26: Line 26:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 1y7w" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
*[[Carbonic anhydrase|Carbonic anhydrase]]
*[[Carbonic anhydrase|Carbonic anhydrase]]
 +
*[[Carbonic anhydrase 3D structures|Carbonic anhydrase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Carbonate dehydratase]]
 
[[Category: Dunaliella salina]]
[[Category: Dunaliella salina]]
-
[[Category: Bageshwar, U K]]
+
[[Category: Large Structures]]
-
[[Category: Gokhman, I]]
+
[[Category: Bageshwar UK]]
-
[[Category: Greenblatt, H M]]
+
[[Category: Gokhman I]]
-
[[Category: ISPC, Israel Structural Proteomics Center]]
+
[[Category: Greenblatt HM]]
-
[[Category: Premkumar, L]]
+
[[Category: Premkumar L]]
-
[[Category: Savchenko, T]]
+
[[Category: Savchenko T]]
-
[[Category: Sussman, J L]]
+
[[Category: Sussman JL]]
-
[[Category: Zamir, A]]
+
[[Category: Zamir A]]
-
[[Category: Algal carbonic anhydrase]]
+
-
[[Category: Alpha-type carbonic anhydrase]]
+
-
[[Category: Anion tolerance]]
+
-
[[Category: Dca ii]]
+
-
[[Category: Dunaliella salina carbonic anhydrase]]
+
-
[[Category: Haltolerant protein]]
+
-
[[Category: Lyase]]
+
-
[[Category: Salt tolerant protein]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Zinc enzyme]]
+

Current revision

Crystal structure of a halotolerant carbonic anhydrase from Dunaliella salina

PDB ID 1y7w

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools