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1znd

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Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

Structural highlights

1znd is a 1 chain structure with sequence from Mus musculus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.6Å
Ligands:	,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

MUP2_MOUSE Binds pheromones that are released from drying urine of males. These pheromones affect the sexual behavior of females.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The contributions of solute-solute dispersion interactions to binding thermodynamics have generally been thought to be small, due to the surmised equality between solute-solvent dispersion interactions prior to the interaction versus solute-solute dispersion interactions following the interaction. The thermodynamics of binding of primary alcohols to the major urinary protein (MUP-I) indicate that this general assumption is not justified. The enthalpy of binding becomes more favorable with increasing chain length, whereas the entropy of binding becomes less favorable, both parameters showing a linear dependence. Despite the hydrophobicity of the interacting species, these data show that binding is not dominated by the classical hydrophobic effect, but can be attributed to favorable ligand-protein dispersion interactions.

Strong solute-solute dispersive interactions in a protein-ligand complex.,Malham R, Johnstone S, Bingham RJ, Barratt E, Phillips SE, Laughton CA, Homans SW J Am Chem Soc. 2005 Dec 7;127(48):17061-7. PMID:16316253^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Malham R, Johnstone S, Bingham RJ, Barratt E, Phillips SE, Laughton CA, Homans SW. Strong solute-solute dispersive interactions in a protein-ligand complex. J Am Chem Soc. 2005 Dec 7;127(48):17061-7. PMID:16316253 doi:10.1021/ja055454g

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1znd"

@@ Line 1: / Line 1: @@
 ==Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex==
-<StructureSection load='1znd' size='340' side='right' caption='[[1znd]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+<StructureSection load='1znd' size='340' side='right'caption='[[1znd]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1znd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZND OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZND FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1znd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZND FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=PE9:PENTAN-1-OL'>PE9</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1zne|1zne]], [[1zng|1zng]], [[1znh|1znh]], [[1znk|1znk]], [[1znl|1znl]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=PE9:PENTAN-1-OL'>PE9</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MUP1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1znd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1znd OCA], [https://pdbe.org/1znd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1znd RCSB], [https://www.ebi.ac.uk/pdbsum/1znd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1znd ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1znd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1znd OCA], [http://pdbe.org/1znd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1znd RCSB], [http://www.ebi.ac.uk/pdbsum/1znd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1znd ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/MUP2_MOUSE MUP2_MOUSE]] Binds pheromones that are released from drying urine of males. These pheromones affect the sexual behavior of females.
+[https://www.uniprot.org/uniprot/MUP2_MOUSE MUP2_MOUSE] Binds pheromones that are released from drying urine of males. These pheromones affect the sexual behavior of females.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 34: / Line 33: @@
 __TOC__
 </StructureSection>
-[[Category: Lk3 transgenic mice]]
+[[Category: Large Structures]]
-[[Category: Barratt, E]]
+[[Category: Mus musculus]]
-[[Category: Bingham, R J]]
+[[Category: Barratt E]]
-[[Category: Homans, S W]]
+[[Category: Bingham RJ]]
-[[Category: Johnstone, S]]
+[[Category: Homans SW]]
-[[Category: Laughton, C A]]
+[[Category: Johnstone S]]
-[[Category: Malham, R]]
+[[Category: Laughton CA]]
-[[Category: Phillips, S E]]
+[[Category: Malham R]]
-[[Category: Beta-barrel]]
+[[Category: Phillips SE]]
-[[Category: Lipocalin]]
-[[Category: Transport protein]]

1znd

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Current revision

Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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