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1znd
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1znd" size="450" color="white" frame="true" align="right" spinBox="true" caption="1znd, resolution 1.6Å" /> '''Strong Solute-Solute ...) |
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| - | [[Image:1znd.gif|left|200px]]<br /><applet load="1znd" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1znd, resolution 1.6Å" /> | ||
| - | '''Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex'''<br /> | ||
| - | == | + | ==Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex== |
| - | The contributions of solute-solute dispersion interactions to binding | + | <StructureSection load='1znd' size='340' side='right'caption='[[1znd]], [[Resolution|resolution]] 1.60Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[1znd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZND FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=PE9:PENTAN-1-OL'>PE9</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1znd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1znd OCA], [https://pdbe.org/1znd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1znd RCSB], [https://www.ebi.ac.uk/pdbsum/1znd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1znd ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/MUP2_MOUSE MUP2_MOUSE] Binds pheromones that are released from drying urine of males. These pheromones affect the sexual behavior of females. | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zn/1znd_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1znd ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The contributions of solute-solute dispersion interactions to binding thermodynamics have generally been thought to be small, due to the surmised equality between solute-solvent dispersion interactions prior to the interaction versus solute-solute dispersion interactions following the interaction. The thermodynamics of binding of primary alcohols to the major urinary protein (MUP-I) indicate that this general assumption is not justified. The enthalpy of binding becomes more favorable with increasing chain length, whereas the entropy of binding becomes less favorable, both parameters showing a linear dependence. Despite the hydrophobicity of the interacting species, these data show that binding is not dominated by the classical hydrophobic effect, but can be attributed to favorable ligand-protein dispersion interactions. | ||
| - | + | Strong solute-solute dispersive interactions in a protein-ligand complex.,Malham R, Johnstone S, Bingham RJ, Barratt E, Phillips SE, Laughton CA, Homans SW J Am Chem Soc. 2005 Dec 7;127(48):17061-7. PMID:16316253<ref>PMID:16316253</ref> | |
| - | + | ||
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| + | <div class="pdbe-citations 1znd" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Mus musculus]] | [[Category: Mus musculus]] | ||
| - | + | [[Category: Barratt E]] | |
| - | [[Category: Barratt | + | [[Category: Bingham RJ]] |
| - | [[Category: Bingham | + | [[Category: Homans SW]] |
| - | [[Category: Homans | + | [[Category: Johnstone S]] |
| - | [[Category: Johnstone | + | [[Category: Laughton CA]] |
| - | [[Category: Laughton | + | [[Category: Malham R]] |
| - | [[Category: Malham | + | [[Category: Phillips SE]] |
| - | [[Category: Phillips | + | |
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Current revision
Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex
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