This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1zz6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:16, 23 August 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of Apo-HppE==
==Crystal Structure of Apo-HppE==
-
<StructureSection load='1zz6' size='340' side='right' caption='[[1zz6]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='1zz6' size='340' side='right'caption='[[1zz6]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1zz6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_wedmorensis"_milard_and_burr_1926 "actinomyces wedmorensis" milard and burr 1926]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZZ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZZ6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1zz6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_wedmorensis Streptomyces wedmorensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZZ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZZ6 FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1zz7|1zz7]], [[1zz8|1zz8]], [[1zz9|1zz9]], [[1zzb|1zzb]], [[1zzc|1zzc]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">fom4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=43759 "Actinomyces wedmorensis" Milard and Burr 1926])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zz6 OCA], [https://pdbe.org/1zz6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zz6 RCSB], [https://www.ebi.ac.uk/pdbsum/1zz6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zz6 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zz6 OCA], [http://pdbe.org/1zz6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zz6 RCSB], [http://www.ebi.ac.uk/pdbsum/1zz6 PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/HPPE_STRWE HPPE_STRWE] Non-heme-dependent dioxygenase that catalyzes the oxidative epoxidation of (S)-2-hydroxypropylphosphonate into (1R,2S)-epoxypropylphosphonate, the final step in the biosynthesis of fosfomycin antibiotic.<ref>PMID:16015285</ref> <ref>PMID:16186494</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zz/1zz6_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zz/1zz6_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zz6 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 26: Line 28:
</div>
</div>
<div class="pdbe-citations 1zz6" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 1zz6" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Epoxidase 3D structures|Epoxidase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Actinomyces wedmorensis milard and burr 1926]]
+
[[Category: Large Structures]]
-
[[Category: Drennan, C L]]
+
[[Category: Streptomyces wedmorensis]]
-
[[Category: Higgins, L J]]
+
[[Category: Drennan CL]]
-
[[Category: Liu, H W]]
+
[[Category: Higgins LJ]]
-
[[Category: Liu, P]]
+
[[Category: Liu HW]]
-
[[Category: Yan, F]]
+
[[Category: Liu P]]
-
[[Category: Apoprotein]]
+
[[Category: Yan F]]
-
[[Category: Cupin]]
+
-
[[Category: Mononuclear iron enzyme]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal Structure of Apo-HppE

PDB ID 1zz6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools