This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2a1f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:17, 23 August 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of Uridylate kinase==
==Crystal Structure of Uridylate kinase==
-
<StructureSection load='2a1f' size='340' side='right' caption='[[2a1f]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='2a1f' size='340' side='right'caption='[[2a1f]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2a1f]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_influenzae"_lehmann_and_neumann_1896 "bacterium influenzae" lehmann and neumann 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A1F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A1F FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2a1f]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae Haemophilus influenzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A1F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A1F FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pyrH, smbA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=727 "Bacterium influenzae" Lehmann and Neumann 1896])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a1f OCA], [http://pdbe.org/2a1f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2a1f RCSB], [http://www.ebi.ac.uk/pdbsum/2a1f PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2a1f TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a1f OCA], [https://pdbe.org/2a1f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a1f RCSB], [https://www.ebi.ac.uk/pdbsum/2a1f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a1f ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2a1f TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PYRH_HAEIN PYRH_HAEIN]] Catalyzes the reversible phosphorylation of UMP to UDP.<ref>PMID:17210578</ref>
+
[https://www.uniprot.org/uniprot/PYRH_HAEIN PYRH_HAEIN] Catalyzes the reversible phosphorylation of UMP to UDP.<ref>PMID:17210578</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a1/2a1f_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a1/2a1f_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 25: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacterium influenzae lehmann and neumann 1896]]
+
[[Category: Haemophilus influenzae]]
-
[[Category: Burley, S K]]
+
[[Category: Large Structures]]
-
[[Category: Gorman, J]]
+
[[Category: Burley SK]]
-
[[Category: Structural genomic]]
+
[[Category: Gorman J]]
-
[[Category: Shapiro, L]]
+
[[Category: Shapiro L]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Pyrh]]
+
-
[[Category: Transferase]]
+
-
[[Category: Uridylate kinase]]
+

Current revision

Crystal Structure of Uridylate kinase

PDB ID 2a1f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools