This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2f7f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:44, 23 August 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2f7f.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of Enterococcus faecalis putative nicotinate phosphoribosyltransferase, NEW YORK STRUCTURAL GENOMICS CONSORTIUM==
-
|PDB= 2f7f |SIZE=350|CAPTION= <scene name='initialview01'>2f7f</scene>, resolution 2.00&Aring;
+
<StructureSection load='2f7f' size='340' side='right'caption='[[2f7f]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=NIO:NICOTINIC+ACID'>NIO</scene>, <scene name='pdbligand=DPO:DIPHOSPHATE'>DPO</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+
<table><tr><td colspan='2'>[[2f7f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_faecalis_V583 Enterococcus faecalis V583]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F7F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F7F FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Nicotinate_phosphoribosyltransferase Nicotinate phosphoribosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.11 2.4.2.11]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
|GENE= EF2626 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226185 Enterococcus faecalis V583])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DPO:DIPHOSPHATE'>DPO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NIO:NICOTINIC+ACID'>NIO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f7f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f7f OCA], [https://pdbe.org/2f7f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f7f RCSB], [https://www.ebi.ac.uk/pdbsum/2f7f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f7f ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2f7f TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of Enterococcus faecalis putative nicotinate phosphoribosyltransferase, NEW YORK STRUCTURAL GENOMICS CONSORTIUM'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q830Y8_ENTFA Q830Y8_ENTFA] Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP (By similarity).[SAAS:SAAS007229_004_012126]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2F7F is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis_v583 Enterococcus faecalis v583]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F7F OCA].
+
Check<jmol>
-
[[Category: Enterococcus faecalis v583]]
+
<jmolCheckbox>
-
[[Category: Nicotinate phosphoribosyltransferase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f7/2f7f_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Almo, S C.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Burley, S K.]]
+
</jmolCheckbox>
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f7f ConSurf].
-
[[Category: Patskovsky, Y.]]
+
<div style="clear:both"></div>
-
[[Category: DPO]]
+
__TOC__
-
[[Category: GOL]]
+
</StructureSection>
-
[[Category: NIO]]
+
[[Category: Enterococcus faecalis V583]]
-
[[Category: SO4]]
+
[[Category: Large Structures]]
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Almo SC]]
-
[[Category: nysgxrc]]
+
[[Category: Burley SK]]
-
[[Category: protein structure initiative]]
+
[[Category: Patskovsky Y]]
-
[[Category: psi]]
+
-
[[Category: structural genomic]]
+
-
[[Category: transferase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:49:02 2008''
+

Current revision

Crystal structure of Enterococcus faecalis putative nicotinate phosphoribosyltransferase, NEW YORK STRUCTURAL GENOMICS CONSORTIUM

PDB ID 2f7f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2f7f"
Personal tools