This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2xot

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:01, 23 August 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
==CRYSTAL STRUCTURE OF NEURONAL LEUCINE RICH REPEAT PROTEIN AMIGO-1==
+
==Crystal structure of neuronal leucine rich repeat protein AMIGO-1==
-
<StructureSection load='2xot' size='340' side='right' caption='[[2xot]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='2xot' size='340' side='right'caption='[[2xot]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2xot]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XOT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XOT FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2xot]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XOT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XOT FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xot FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xot OCA], [http://pdbe.org/2xot PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xot RCSB], [http://www.ebi.ac.uk/pdbsum/2xot PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xot ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xot FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xot OCA], [https://pdbe.org/2xot PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xot RCSB], [https://www.ebi.ac.uk/pdbsum/2xot PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xot ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/AMGO1_MOUSE AMGO1_MOUSE]] Promotes growth and fasciculation of neurites from cultured hippocampal neurons. May be involved in fasciculation as well as myelination of developing neural axons. May have a role in regeneration as well as neural plasticity in the adult nervous system. May mediate homophilic as well as heterophilic cell-cell interaction and contribute to signal transduction through its intracellular domain (By similarity).[UniProtKB:Q80ZD7]
+
[https://www.uniprot.org/uniprot/AMGO1_MOUSE AMGO1_MOUSE] Promotes growth and fasciculation of neurites from cultured hippocampal neurons. May be involved in fasciculation as well as myelination of developing neural axons. May have a role in regeneration as well as neural plasticity in the adult nervous system. May mediate homophilic as well as heterophilic cell-cell interaction and contribute to signal transduction through its intracellular domain (By similarity).[UniProtKB:Q80ZD7]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Lk3 transgenic mice]]
+
[[Category: Large Structures]]
-
[[Category: Goldman, A]]
+
[[Category: Mus musculus]]
-
[[Category: Kajander, T]]
+
[[Category: Goldman A]]
-
[[Category: Kuja-Panula, J]]
+
[[Category: Kajander T]]
-
[[Category: Rauvala, H]]
+
[[Category: Kuja-Panula J]]
-
[[Category: Cell adhesion]]
+
[[Category: Rauvala H]]
-
[[Category: Neurite growth regulation]]
+
-
[[Category: Neuronal protein]]
+

Current revision

Crystal structure of neuronal leucine rich repeat protein AMIGO-1

PDB ID 2xot

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools