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2y80

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Current revision (08:10, 23 August 2023) (edit) (undo)
 
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== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2y80]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y80 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Y80 FirstGlance]. <br>
<table><tr><td colspan='2'>[[2y80]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y80 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Y80 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=439:6-CHLORO-N-{(3S)-1-[(1S)-1-(DIMETHYLAMINO)-2,3-DIHYDRO-1H-INDEN-5-YL]-2-OXO-3-PYRROLIDINYL}-2-NAPHTHALENESULFONAMIDE'>439</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2j34|2j34]], [[1wu1|1wu1]], [[2bq7|2bq7]], [[2y5g|2y5g]], [[2w3k|2w3k]], [[2vwo|2vwo]], [[1nfw|1nfw]], [[1xka|1xka]], [[2y5f|2y5f]], [[2vvv|2vvv]], [[2gd4|2gd4]], [[2xbx|2xbx]], [[1lpg|1lpg]], [[1msx|1msx]], [[2vvu|2vvu]], [[1p0s|1p0s]], [[2g00|2g00]], [[1mq6|1mq6]], [[1xkb|1xkb]], [[1iqe|1iqe]], [[1g2m|1g2m]], [[2vh0|2vh0]], [[1nfy|1nfy]], [[2uwl|2uwl]], [[2bok|2bok]], [[1lpz|1lpz]], [[1hcg|1hcg]], [[2w3i|2w3i]], [[2jkh|2jkh]], [[1z6e|1z6e]], [[2uwp|2uwp]], [[2xc4|2xc4]], [[1g2l|1g2l]], [[1nfu|1nfu]], [[2xc0|2xc0]], [[1fax|1fax]], [[2bq6|2bq6]], [[1iqf|1iqf]], [[2y7x|2y7x]], [[1nl8|1nl8]], [[1iqg|1iqg]], [[1iqh|1iqh]], [[1lqd|1lqd]], [[2uwo|2uwo]], [[1c5m|1c5m]], [[1ioe|1ioe]], [[1f0s|1f0s]], [[1f0r|1f0r]], [[2xby|2xby]], [[2xc5|2xc5]], [[2bmg|2bmg]], [[1mq5|1mq5]], [[1iqn|1iqn]], [[2xbv|2xbv]], [[2bqw|2bqw]], [[1iqm|1iqm]], [[1ezq|1ezq]], [[2vwl|2vwl]], [[2vh6|2vh6]], [[1fjs|1fjs]], [[1lpk|1lpk]], [[2j4i|2j4i]], [[2y5h|2y5h]], [[1nfx|1nfx]], [[2vwn|2vwn]], [[1iqj|1iqj]], [[2j94|2j94]], [[2cji|2cji]], [[2j95|2j95]], [[2j38|2j38]], [[2boh|2boh]], [[2vvc|2vvc]], [[2w26|2w26]], [[1iqi|1iqi]], [[2vwm|2vwm]], [[1kye|1kye]], [[1iqk|1iqk]], [[2wyj|2wyj]], [[1v3x|1v3x]], [[2fzz|2fzz]], [[2j2u|2j2u]], [[2xbw|2xbw]], [[1ksn|1ksn]], [[1iql|1iql]], [[2wyg|2wyg]], [[2y82|2y82]], [[2y81|2y81]], [[2y7z|2y7z]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=439:6-CHLORO-N-{(3S)-1-[(1S)-1-(DIMETHYLAMINO)-2,3-DIHYDRO-1H-INDEN-5-YL]-2-OXO-3-PYRROLIDINYL}-2-NAPHTHALENESULFONAMIDE'>439</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Coagulation_factor_Xa Coagulation factor Xa], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.6 3.4.21.6] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2y80 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y80 OCA], [https://pdbe.org/2y80 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2y80 RCSB], [https://www.ebi.ac.uk/pdbsum/2y80 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2y80 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2y80 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y80 OCA], [https://pdbe.org/2y80 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2y80 RCSB], [https://www.ebi.ac.uk/pdbsum/2y80 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2y80 ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
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[[https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN]] Defects in F10 are the cause of factor X deficiency (FA10D) [MIM:[https://omim.org/entry/227600 227600]]. A hemorrhagic disease with variable presentation. Affected individuals can manifest prolonged nasal and mucosal hemorrhage, menorrhagia, hematuria, and occasionally hemarthrosis. Some patients do not have clinical bleeding diathesis.<ref>PMID:2790181</ref> <ref>PMID:1973167</ref> <ref>PMID:1985698</ref> <ref>PMID:7669671</ref> <ref>PMID:8529633</ref> <ref>PMID:7860069</ref> <ref>PMID:8845463</ref> <ref>PMID:8910490</ref> <ref>PMID:10468877</ref> <ref>PMID:10746568</ref> <ref>PMID:10739379</ref> <ref>PMID:11248282</ref> <ref>PMID:11728527</ref> <ref>PMID:12945883</ref> <ref>PMID:15650540</ref> <ref>PMID:17393015</ref> <ref>PMID:19135706</ref>
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[https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN] Defects in F10 are the cause of factor X deficiency (FA10D) [MIM:[https://omim.org/entry/227600 227600]. A hemorrhagic disease with variable presentation. Affected individuals can manifest prolonged nasal and mucosal hemorrhage, menorrhagia, hematuria, and occasionally hemarthrosis. Some patients do not have clinical bleeding diathesis.<ref>PMID:2790181</ref> <ref>PMID:1973167</ref> <ref>PMID:1985698</ref> <ref>PMID:7669671</ref> <ref>PMID:8529633</ref> <ref>PMID:7860069</ref> <ref>PMID:8845463</ref> <ref>PMID:8910490</ref> <ref>PMID:10468877</ref> <ref>PMID:10746568</ref> <ref>PMID:10739379</ref> <ref>PMID:11248282</ref> <ref>PMID:11728527</ref> <ref>PMID:12945883</ref> <ref>PMID:15650540</ref> <ref>PMID:17393015</ref> <ref>PMID:19135706</ref>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN]] Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting.
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[https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN] Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Coagulation factor Xa]]
 
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Adams, C]]
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[[Category: Adams C]]
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[[Category: Blows, M]]
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[[Category: Blows M]]
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[[Category: Brown, D]]
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[[Category: Brown D]]
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[[Category: Burns-Kurtis, C L]]
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[[Category: Burns-Kurtis CL]]
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[[Category: Chan, C]]
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[[Category: Chan C]]
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[[Category: Chaudry, L]]
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[[Category: Chaudry L]]
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[[Category: Convery, M A]]
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[[Category: Convery MA]]
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[[Category: Davies, D E]]
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[[Category: Davies DE]]
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[[Category: Exall, A M]]
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[[Category: Exall AM]]
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[[Category: Foster, G]]
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[[Category: Foster G]]
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[[Category: Harling, J D]]
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[[Category: Harling JD]]
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[[Category: Hortense, E]]
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[[Category: Hortense E]]
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[[Category: Irvine, S]]
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[[Category: Irvine S]]
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[[Category: Irving, W R]]
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[[Category: Irving WR]]
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[[Category: Jackson, S]]
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[[Category: Jackson S]]
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[[Category: Kleanthous, S]]
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[[Category: Kleanthous S]]
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[[Category: Pateman, A J]]
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[[Category: Pateman AJ]]
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[[Category: Patikis, A N]]
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[[Category: Patikis AN]]
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[[Category: Roethka, T J]]
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[[Category: Roethka TJ]]
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[[Category: Senger, S]]
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[[Category: Senger S]]
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[[Category: Stelman, G J]]
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[[Category: Stelman GJ]]
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[[Category: Toomey, J R]]
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[[Category: Toomey JR]]
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[[Category: Watson, N S]]
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[[Category: Watson NS]]
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[[Category: West, R I]]
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[[Category: West RI]]
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[[Category: Whittaker, C]]
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[[Category: Whittaker C]]
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[[Category: Young, R J]]
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[[Category: Young RJ]]
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[[Category: Zhou, P]]
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[[Category: Zhou P]]
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[[Category: Blood clotting]]
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[[Category: Blood coagulation]]
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[[Category: Hydrolase]]
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[[Category: Serine protease]]
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Current revision

Structure and property based design of factor Xa inhibitors: pyrrolidin-2-ones with aminoindane and phenylpyrrolidine P4 motifs

PDB ID 2y80

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