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2y81
From Proteopedia
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| - | <StructureSection load='2y81' size='340' side='right' caption='[[2y81]], [[Resolution|resolution]] 1.70Å' scene=''> | + | ==Structure and property based design of factor Xa inhibitors: pyrrolidin-2-ones with aminoindane and phenylpyrrolidine P4 motifs== |
| + | <StructureSection load='2y81' size='340' side='right'caption='[[2y81]], [[Resolution|resolution]] 1.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2y81]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2y81]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y81 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Y81 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=931:6-CHLORO-N-((3S)-2-OXO-1-{4-[(2R)-2--PYRROLIDINYL]+PHENYL}-3-PYRROLIDINYL)-2-NAPHTHALENESULFONAMIDE'>931</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=931:6-CHLORO-N-((3S)-2-OXO-1-{4-[(2R)-2--PYRROLIDINYL]+PHENYL}-3-PYRROLIDINYL)-2-NAPHTHALENESULFONAMIDE'>931</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2y81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y81 OCA], [https://pdbe.org/2y81 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2y81 RCSB], [https://www.ebi.ac.uk/pdbsum/2y81 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2y81 ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Disease == | == Disease == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN] Defects in F10 are the cause of factor X deficiency (FA10D) [MIM:[https://omim.org/entry/227600 227600]. A hemorrhagic disease with variable presentation. Affected individuals can manifest prolonged nasal and mucosal hemorrhage, menorrhagia, hematuria, and occasionally hemarthrosis. Some patients do not have clinical bleeding diathesis.<ref>PMID:2790181</ref> <ref>PMID:1973167</ref> <ref>PMID:1985698</ref> <ref>PMID:7669671</ref> <ref>PMID:8529633</ref> <ref>PMID:7860069</ref> <ref>PMID:8845463</ref> <ref>PMID:8910490</ref> <ref>PMID:10468877</ref> <ref>PMID:10746568</ref> <ref>PMID:10739379</ref> <ref>PMID:11248282</ref> <ref>PMID:11728527</ref> <ref>PMID:12945883</ref> <ref>PMID:15650540</ref> <ref>PMID:17393015</ref> <ref>PMID:19135706</ref> |
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN] Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting. |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 2y81" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Coagulation factor Xa]] | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
| - | [[Category: Adams | + | [[Category: Large Structures]] |
| - | [[Category: Blows | + | [[Category: Adams C]] |
| - | [[Category: Brown | + | [[Category: Blows M]] |
| - | [[Category: Burns-Kurtis | + | [[Category: Brown D]] |
| - | [[Category: Chan | + | [[Category: Burns-Kurtis CL]] |
| - | [[Category: Chaudry | + | [[Category: Chan C]] |
| - | [[Category: Convery | + | [[Category: Chaudry L]] |
| - | [[Category: Davies | + | [[Category: Convery MA]] |
| - | [[Category: Exall | + | [[Category: Davies DE]] |
| - | [[Category: Foster | + | [[Category: Exall AM]] |
| - | [[Category: Harling | + | [[Category: Foster G]] |
| - | [[Category: Hortense | + | [[Category: Harling JD]] |
| - | [[Category: Irvine | + | [[Category: Hortense E]] |
| - | [[Category: Irving | + | [[Category: Irvine S]] |
| - | [[Category: Jackson | + | [[Category: Irving WR]] |
| - | [[Category: Kleanthous | + | [[Category: Jackson S]] |
| - | [[Category: Pateman | + | [[Category: Kleanthous S]] |
| - | [[Category: Patikis | + | [[Category: Pateman AJ]] |
| - | [[Category: Roethka | + | [[Category: Patikis AN]] |
| - | [[Category: Senger | + | [[Category: Roethka TJ]] |
| - | [[Category: Stelman | + | [[Category: Senger S]] |
| - | [[Category: Toomey | + | [[Category: Stelman GJ]] |
| - | [[Category: Watson | + | [[Category: Toomey JR]] |
| - | [[Category: West | + | [[Category: Watson NS]] |
| - | [[Category: Whittaker | + | [[Category: West RI]] |
| - | [[Category: Young | + | [[Category: Whittaker C]] |
| - | [[Category: Zhou | + | [[Category: Young RJ]] |
| - | + | [[Category: Zhou P]] | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Structure and property based design of factor Xa inhibitors: pyrrolidin-2-ones with aminoindane and phenylpyrrolidine P4 motifs
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Categories: Homo sapiens | Large Structures | Adams C | Blows M | Brown D | Burns-Kurtis CL | Chan C | Chaudry L | Convery MA | Davies DE | Exall AM | Foster G | Harling JD | Hortense E | Irvine S | Irving WR | Jackson S | Kleanthous S | Pateman AJ | Patikis AN | Roethka TJ | Senger S | Stelman GJ | Toomey JR | Watson NS | West RI | Whittaker C | Young RJ | Zhou P
