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5i2b
From Proteopedia
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==Crystal structure of a peptide deformylase from Burkholderia ambifaria with actinonin== | ==Crystal structure of a peptide deformylase from Burkholderia ambifaria with actinonin== | ||
| - | <StructureSection load='5i2b' size='340' side='right' caption='[[5i2b]], [[Resolution|resolution]] 1.70Å' scene=''> | + | <StructureSection load='5i2b' size='340' side='right'caption='[[5i2b]], [[Resolution|resolution]] 1.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5i2b]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I2B OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[5i2b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_ambifaria_IOP40-10 Burkholderia ambifaria IOP40-10]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I2B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5I2B FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BB2:ACTINONIN'>BB2</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | < | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5i2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i2b OCA], [https://pdbe.org/5i2b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5i2b RCSB], [https://www.ebi.ac.uk/pdbsum/5i2b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5i2b ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/B1FPK4_9BURK B1FPK4_9BURK] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163] |
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | + | [[Category: Burkholderia ambifaria IOP40-10]] | |
| - | + | [[Category: Large Structures]] | |
| - | [[Category: Burkholderia ambifaria]] | + | |
| - | [[Category: | + | |
| - | + | ||
Current revision
Crystal structure of a peptide deformylase from Burkholderia ambifaria with actinonin
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