This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


8fd0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: '''Unreleased structure''' The entry 8fd0 is ON HOLD Authors: Salom, D., Palczewski, K., Kiser, P.D. Description: Crystal structure of bovine rod opsin in complex with a nanobody [[Cat...)
Current revision (09:09, 30 August 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 8fd0 is ON HOLD
+
==Crystal structure of bovine rod opsin in complex with a nanobody==
-
 
+
<StructureSection load='8fd0' size='340' side='right'caption='[[8fd0]], [[Resolution|resolution]] 3.71&Aring;' scene=''>
-
Authors: Salom, D., Palczewski, K., Kiser, P.D.
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[8fd0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus] and [https://en.wikipedia.org/wiki/Lama_glama Lama glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8FD0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8FD0 FirstGlance]. <br>
-
Description: Crystal structure of bovine rod opsin in complex with a nanobody
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.71&#8491;</td></tr>
-
[[Category: Unreleased Structures]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
[[Category: Salom, D]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8fd0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8fd0 OCA], [https://pdbe.org/8fd0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8fd0 RCSB], [https://www.ebi.ac.uk/pdbsum/8fd0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8fd0 ProSAT]</span></td></tr>
-
[[Category: Kiser, P.D]]
+
</table>
-
[[Category: Palczewski, K]]
+
== Function ==
 +
[https://www.uniprot.org/uniprot/OPSD_BOVIN OPSD_BOVIN] Photoreceptor required for image-forming vision at low light intensity. Required for photoreceptor cell viability after birth. Light-induced isomerization of 11-cis to all-trans retinal triggers a conformational change leading to G-protein activation and release of all-trans retinal (By similarity).<ref>PMID:16908857</ref> <ref>PMID:17060607</ref>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bos taurus]]
 +
[[Category: Lama glama]]
 +
[[Category: Large Structures]]
 +
[[Category: Kiser PD]]
 +
[[Category: Palczewski K]]
 +
[[Category: Salom D]]

Current revision

Crystal structure of bovine rod opsin in complex with a nanobody

PDB ID 8fd0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools