This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2g2r

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:35, 30 August 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2g2r.gif|left|200px]]
 
-
{{Structure
+
==Green-fluorescent antibody 11G10 in complex with its hapten (nitro-stilbene derivative)==
-
|PDB= 2g2r |SIZE=350|CAPTION= <scene name='initialview01'>2g2r</scene>, resolution 2.75&Aring;
+
<StructureSection load='2g2r' size='340' side='right'caption='[[2g2r]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> and <scene name='pdbligand=TNS:N-(TRANS-4&#39;-NITRO-4-STILBENYL)-N-METHYL-5-AMINO-PENTANOIC ACID'>TNS</scene>
+
<table><tr><td colspan='2'>[[2g2r]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G2R FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.75&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TNS:N-(TRANS-4-NITRO-4-STILBENYL)-N-METHYL-5-AMINO-PENTANOIC+ACID'>TNS</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g2r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g2r OCA], [https://pdbe.org/2g2r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g2r RCSB], [https://www.ebi.ac.uk/pdbsum/2g2r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g2r ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/HVM63_MOUSE HVM63_MOUSE]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g2/2g2r_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2g2r ConSurf].
 +
<div style="clear:both"></div>
-
'''Green-fluorescent antibody 11G10 in complex with its hapten (nitro-stilbene derivative)'''
+
==See Also==
-
 
+
*[[Antibody 3D structures|Antibody 3D structures]]
-
 
+
*[[3D structures of non-human antibody|3D structures of non-human antibody]]
-
==About this Structure==
+
__TOC__
-
2G2R is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2R OCA].
+
</StructureSection>
-
 
+
[[Category: Large Structures]]
-
==Reference==
+
-
The effects of antibodies on stilbene excited-state energetics., Tian F, Debler EW, Millar DP, Deniz AA, Wilson IA, Schultz PG, Angew Chem Int Ed Engl. 2006 Nov 27;45(46):7763-5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17089439 17089439]
+
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Protein complex]]
+
[[Category: Debler EW]]
-
[[Category: Debler, E W.]]
+
[[Category: Wilson IA]]
-
[[Category: Wilson, I A.]]
+
-
[[Category: SO4]]
+
-
[[Category: TNS]]
+
-
[[Category: green-fluorescent antibody]]
+
-
[[Category: immunoglobulin]]
+
-
[[Category: stilbene-complex]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 23 15:08:44 2008''
+

Current revision

Green-fluorescent antibody 11G10 in complex with its hapten (nitro-stilbene derivative)

PDB ID 2g2r

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools