This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2guu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:47, 30 August 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2guu.gif|left|200px]]
 
-
<!--
+
==crystal structure of Plasmodium vivax orotidine 5-monophosphate decarboxylase with 6-aza-UMP bound==
-
The line below this paragraph, containing "STRUCTURE_2guu", creates the "Structure Box" on the page.
+
<StructureSection load='2guu' size='340' side='right'caption='[[2guu]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2guu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_vivax Plasmodium vivax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GUU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GUU FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UP6:6-AZA+URIDINE+5-MONOPHOSPHATE'>UP6</scene></td></tr>
-
{{STRUCTURE_2guu| PDB=2guu | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2guu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2guu OCA], [https://pdbe.org/2guu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2guu RCSB], [https://www.ebi.ac.uk/pdbsum/2guu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2guu ProSAT]</span></td></tr>
-
 
+
</table>
-
'''crystal structure of Plasmodium vivax orotidine 5-monophosphate decarboxylase with 6-aza-UMP bound'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GUU OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gu/2guu_consurf.spt"</scriptWhenChecked>
-
[[Category: Amani, M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Arrowsmith, C H.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Bochkarev, A.]]
+
</jmolCheckbox>
-
[[Category: Dong, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2guu ConSurf].
-
[[Category: Edwards, A M.]]
+
<div style="clear:both"></div>
-
[[Category: Hui, R.]]
+
__TOC__
-
[[Category: Koeieradzki, I.]]
+
</StructureSection>
-
[[Category: Kotra, L.]]
+
[[Category: Large Structures]]
-
[[Category: Lew, J.]]
+
[[Category: Plasmodium vivax]]
-
[[Category: Pai, E F.]]
+
[[Category: Amani M]]
-
[[Category: SGC, Structural Genomics Consortium.]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Sundararajan, E.]]
+
[[Category: Bochkarev A]]
-
[[Category: Sundstrom, M.]]
+
[[Category: Dong A]]
-
[[Category: Vedadi, M.]]
+
[[Category: Edwards AM]]
-
[[Category: Wasney, G.]]
+
[[Category: Hui R]]
-
[[Category: Weigelt, J.]]
+
[[Category: Koeieradzki I]]
-
[[Category: Zhao, Y.]]
+
[[Category: Kotra L]]
-
[[Category: 6-aza-ump]]
+
[[Category: Lew J]]
-
[[Category: Odcase]]
+
[[Category: Pai EF]]
-
[[Category: Sgc]]
+
[[Category: Sundararajan E]]
-
[[Category: Structural genomic]]
+
[[Category: Sundstrom M]]
-
[[Category: Structural genomics consortium]]
+
[[Category: Vedadi M]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 05:33:49 2008''
+
[[Category: Wasney G]]
 +
[[Category: Weigelt J]]
 +
[[Category: Zhao Y]]

Current revision

crystal structure of Plasmodium vivax orotidine 5-monophosphate decarboxylase with 6-aza-UMP bound

PDB ID 2guu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2guu"
Personal tools