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2gze

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(New page: 200px {{Structure |PDB= 2gze |SIZE=350|CAPTION= <scene name='initialview01'>2gze</scene>, resolution 1.800&Aring; |SITE= <scene name='pdbsite=AC1:Zn+Binding+Site+...)
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[[Image:2gze.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of the E9 DNase domain with a mutant immunity protein IM9 (Y55A)==
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|PDB= 2gze |SIZE=350|CAPTION= <scene name='initialview01'>2gze</scene>, resolution 1.800&Aring;
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<StructureSection load='2gze' size='340' side='right'caption='[[2gze]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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|SITE= <scene name='pdbsite=AC1:Zn+Binding+Site+For+Residue+B+301'>AC1</scene> and <scene name='pdbsite=AC2:Po4+Binding+Site+For+Residue+B+403'>AC2</scene>
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> and <scene name='pdbligand=PO4:PHOSPHATE ION'>PO4</scene>
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<table><tr><td colspan='2'>[[2gze]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GZE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GZE FirstGlance]. <br>
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|ACTIVITY= [http://en.wikipedia.org/wiki/Deoxyribonuclease_I Deoxyribonuclease I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.1 3.1.21.1]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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|GENE= IMM9_ECOLI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), col, cei ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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}}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gze FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gze OCA], [https://pdbe.org/2gze PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gze RCSB], [https://www.ebi.ac.uk/pdbsum/2gze PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gze ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/IMM9_ECOLX IMM9_ECOLX] This protein is able to protect a cell, which harbors the plasmid ColE9 encoding colicin E9, against colicin E9, it binds specifically to the DNase-type colicin and inhibits its bactericidal activity.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gz/2gze_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gze ConSurf].
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<div style="clear:both"></div>
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'''Crystal structure of the E9 DNase domain with a mutant immunity protein IM9 (Y55A)'''
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==See Also==
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*[[Colicin 3D structures|Colicin 3D structures]]
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*[[Colicin immunity protein 3D structures|Colicin immunity protein 3D structures]]
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==Overview==
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__TOC__
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The crystal structure of the cytotoxic endonuclease domain from the bacterial toxin colicin E9 in complex with its cognate immunity protein Im9 reveals that the inhibitor does not bind at the active site, the core of which comprises the HNH motif found in intron-encoded homing endonucleases, but rather at an adjacent position leaving the active site exposed yet unable to bind DNA because of steric and electrostatic clashes with incoming substrate. Although its mode of action is unorthodox, Im9 is a remarkably effective inhibitor since it folds within milliseconds and then associates with its target endonuclease at the rate of diffusion to form an inactive complex with sub-femtomolar binding affinity. This hyperefficient mechanism of inhibition could be well suited to other toxic enzyme systems, particularly where the substrate is a polymer extending beyond the boundaries of the active site.
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</StructureSection>
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[[Category: Escherichia coli K-12]]
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==About this Structure==
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[[Category: Large Structures]]
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2GZE is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GZE OCA].
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[[Category: Hemmings AM]]
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[[Category: Kleanthous C]]
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==Reference==
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[[Category: Kolade OO]]
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Structural and mechanistic basis of immunity toward endonuclease colicins., Kleanthous C, Kuhlmann UC, Pommer AJ, Ferguson N, Radford SE, Moore GR, James R, Hemmings AM, Nat Struct Biol. 1999 Mar;6(3):243-52. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10074943 10074943]
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[[Category: Kuhlmann UC]]
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[[Category: Deoxyribonuclease I]]
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[[Category: Santi PS]]
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[[Category: Escherichia coli]]
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[[Category: Protein complex]]
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[[Category: Hemmings, A M.]]
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[[Category: Kleanthous, C.]]
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[[Category: Kolade, O O.]]
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[[Category: Kuhlmann, U C.]]
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[[Category: Santi, P S.]]
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[[Category: PO4]]
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[[Category: ZN]]
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[[Category: 4-helix bundle]]
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[[Category: antibiotic/antibiotic inhibitor complex]]
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[[Category: dnase domain]]
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[[Category: hnh-motif]]
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[[Category: protein-protein complex]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:10:43 2008''
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Current revision

Crystal structure of the E9 DNase domain with a mutant immunity protein IM9 (Y55A)

PDB ID 2gze

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