This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2hr5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:00, 30 August 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2hr5.gif|left|200px]]
 
-
{{Structure
+
==PF1283- Rubrerythrin from Pyrococcus furiosus iron bound form==
-
|PDB= 2hr5 |SIZE=350|CAPTION= <scene name='initialview01'>2hr5</scene>, resolution 2.70&Aring;
+
<StructureSection load='2hr5' size='340' side='right'caption='[[2hr5]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>
+
<table><tr><td colspan='2'>[[2hr5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HR5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HR5 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1592 COG1592], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01041 Rubrerythrin], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00729 rubredoxin_SM]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hr5 OCA], [https://pdbe.org/2hr5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hr5 RCSB], [https://www.ebi.ac.uk/pdbsum/2hr5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hr5 ProSAT], [https://www.topsan.org/Proteins/SECSG/2hr5 TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hr5 OCA], [http://www.ebi.ac.uk/pdbsum/2hr5 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2hr5 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q9UWP7_9EURY Q9UWP7_9EURY]
-
 
+
== Evolutionary Conservation ==
-
'''PF1283- Ruberythrin from Pyrococcus furiosus iron bound form'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hr/2hr5_consurf.spt"</scriptWhenChecked>
-
2HR5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HR5 OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hr5 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pyrococcus furiosus]]
[[Category: Pyrococcus furiosus]]
-
[[Category: Single protein]]
+
[[Category: Adams MWW]]
-
[[Category: Adams, M W.W.]]
+
[[Category: Chen L]]
-
[[Category: Chen, L.]]
+
[[Category: Dillard BD]]
-
[[Category: Dillard, B D.]]
+
[[Category: Jenney Jr FE]]
-
[[Category: Jr., F E.Jenney.]]
+
[[Category: Liu ZJ]]
-
[[Category: Liu, Z J.]]
+
[[Category: Rose JP]]
-
[[Category: Rose, ,J P.]]
+
[[Category: Ruble JR]]
-
[[Category: Ruble, J R.]]
+
[[Category: Wang BC]]
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
-
[[Category: Wang, B C.]]
+
-
[[Category: pf1283]]
+
-
[[Category: pfu-1210814]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: pyrococcus furiosus]]
+
-
[[Category: ruberythrin]]
+
-
[[Category: secsg]]
+
-
[[Category: southeast collaboratory for structural genomic]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:34:12 2008''
+

Current revision

PF1283- Rubrerythrin from Pyrococcus furiosus iron bound form

PDB ID 2hr5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools