This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2o9z

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:33, 30 August 2023) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2o9z.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of RebH, a FAD-dependent halogenase from Lechevalieria aerocolonigenes, the Apo form==
-
|PDB= 2o9z |SIZE=350|CAPTION= <scene name='initialview01'>2o9z</scene>, resolution 2.494&Aring;
+
<StructureSection load='2o9z' size='340' side='right'caption='[[2o9z]], [[Resolution|resolution]] 2.49&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Po4+Binding+Site+For+Residue+A+531'>AC1</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>
+
<table><tr><td colspan='2'>[[2o9z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lentzea_aerocolonigenes Lentzea aerocolonigenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O9Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O9Z FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.494&#8491;</td></tr>
-
|GENE= rbmJ, rebH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=68170 Lechevalieria aerocolonigenes])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o9z OCA], [https://pdbe.org/2o9z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o9z RCSB], [https://www.ebi.ac.uk/pdbsum/2o9z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o9z ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[2oa1|2OA1]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o9z OCA], [http://www.ebi.ac.uk/pdbsum/2o9z PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2o9z RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/REBH_LENAE REBH_LENAE] Involved in the biosynthesis of the indolocarbazole antitumor agent rebeccamycin. Catalyzes the chlorination of tryptophan (Trp) at C7 position to yield 7-chlorotryptophan. The reaction between FADH2, Cl-, and O2 generates the powerful oxidant HOCl, which is presumed to carry out the chlorination reaction. The reaction of HOCl with the active site Lys-79 generates a lysine chloramine, which plays a key role in directing regiospecific chlorination of substrate in this important class of biosynthetic enzymes. It is also able to use bromide ions to generate monobrominated Trp.<ref>PMID:11983340</ref> <ref>PMID:15743914</ref> <ref>PMID:17260957</ref>
-
 
+
== Evolutionary Conservation ==
-
'''Crystal Structure of RebH, a FAD-dependent halogenase from Lechevalieria aerocolonigenes, the Apo form'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o9/2o9z_consurf.spt"</scriptWhenChecked>
-
2O9Z is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lechevalieria_aerocolonigenes Lechevalieria aerocolonigenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O9Z OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==Reference==
+
</jmolCheckbox>
-
The structure of flavin-dependent tryptophan 7-halogenase RebH., Bitto E, Huang Y, Bingman CA, Singh S, Thorson JS, Phillips GN Jr, Proteins. 2008 Jan 1;70(1):289-93. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17876823 17876823]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o9z ConSurf].
-
[[Category: Lechevalieria aerocolonigenes]]
+
<div style="clear:both"></div>
-
[[Category: Single protein]]
+
== References ==
-
[[Category: Bingman, C A.]]
+
<references/>
-
[[Category: Bitto, E.]]
+
__TOC__
-
[[Category: Jr., G N.Phillips.]]
+
</StructureSection>
-
[[Category: biosynthetic protein]]
+
[[Category: Large Structures]]
-
[[Category: flavin]]
+
[[Category: Lentzea aerocolonigenes]]
-
[[Category: flavoprotein]]
+
[[Category: Bingman CA]]
-
[[Category: halogenase]]
+
[[Category: Bitto E]]
-
[[Category: rebeccamycin]]
+
[[Category: Phillips Jr GN]]
-
[[Category: rebh]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:14:51 2008''
+

Current revision

Crystal Structure of RebH, a FAD-dependent halogenase from Lechevalieria aerocolonigenes, the Apo form

PDB ID 2o9z

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools